CCP4 wiki - User contributions [en]

Synchrotrons

2008-07-26T21:38:07Z

Phzwart:

For a list of synchrotrons please see [http://www.esrf.eu/UsersAndScience/Links/Synchrotrons Synchrotron beamlines]

The following beamlines offer mail-in service or remote access:
(compiled from the CCP4 BB July 2008)

1. The ALS BCSB beamlines http://bcsb.lbl.gov/beamlines.htm have a mail-in type program name collaborative crystallography on beamlines 5.0.2 (MAD) and 5.0.1 (Se-SAD/ Fixed
Wavelength).
Remote access is currently available on the sector 5 stations (5.0.1
5.0.2 and 5.0.3) for PRT members only. ALS 4.2.2 beamline has remote capability

2. Beamline 3BM1 at the Australian Synchrotron http://www.synchrotron.org.au has full remote access available for users. We use the same Blu-Ice gui as SSRL and use the SAM robot.
When 3ID is available for general user program (2009) it will also have full remote access capabilities.

3. BNL / NSLS Mail-in program http://www.px.nsls.bnl.gov/, where three scientists spend about one full-time equivalent of effort, employing about one full-time beamline among the six PXRR beamlines.
Access to Beam Time http://www.px.nsls.bnl.gov/beamtime_requests.html Mail-in Program http://www.px.nsls.bnl.gov/Mailin.html

4. The canadian light source http://www.lightsource.ca/ has at least mail in protein crystallography.

5. MacCHESS http://www.macchess.cornell.edu/ does "mail-in" collection on all PX beamlines.

6. All the ESRF MX/PX beamlines (ID14-1, ID14-2, ID14-4, ID23-1, ID29), and the CRG beam-line BM14, have remote access.
http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
For industrial users there is also the MXpress mail in service:
http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service

7. SEC-CAT 22-ID and 22-BM at APS http://www.ser-cat.org/ will do both mail-in and remote

8. SPring8 in Japan http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology has a mail-in system.

9. SSRL http://smb.slac.stanford.edu/ all PX beamlines have [http://smb.slac.stanford.edu/public/facilities/remote_access/ remote capability]. About 75% of the users use fully remote data collection routinely

10. CAMD's PX beamline http://www.camd.lsu.edu/gcpcc/GCPCChome.htm has a mail-in program for both consortium members and outside users.

11. BESSY BL14.1 and BL14.2 http://www.mx.bessy.de, The BESSY-MX group is offering the "mail-in" service for industrial collaborators.

12. SLS (http://sls.web.psi.ch/): For industrial users there is a Mail-In Service available since more than 3 years. For technical questions please contact Joachim Diez (Joachim.Diez@psi.ch) or Clemens Schulze-Briese (clemens.schulze@psi.ch), for questions about contracts please contact Philipp Dietrich (philipp.dietrich@psi.ch). Remote operation is in preparation for all beamlines.

A useful link from PDB containing synchrotron info:
http://biosync.rcsb.org/

<table border = "1">
<tr>

<td>Synchrotron</td>
<td>Beamline</td>
<td>Mail-in/ Remote</td>
<td>type of puck</td>
<td>Fixed Wavelength/ Se-SAD/ MAD</td>
<td>URL</td>
</tr>
<tr>
<td>ALS</td>
<td>4.2.2 </td>
<td>Remote capabilities </td>
<td>ACTOR magazine </td>
<td> MAD </td>
<td> http://www-als.lbl.gov/als/techspecs/bl4.2.2.html </td>
</tr>
<tr>

<td>ALS</td>
<td>5.0.1</td>
<td>Mail & Remote (PRT members)</td>
<td>ALS puck</td>
<td>Fixed Wavelength/ Se-SAD </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.1</td>
</tr>
<tr>
<td>ALS </td>
<td>5.0.2 </td>
<td>Mail & Remote (PRT members) </td>
<td>ALS puck </td>
<td>MAD </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.2</td>
</tr>
<tr>
<td>ALS</td>
<td>5.0.3 </td>
<td>Remote (PRT members) </td>
<td>ALS puck </td>
<td> Fixed Wavelength/ Se-SAD </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.3</td>
</tr>

<tr>
<td>Australian Synchrotron </td>
<td>3BM1 </td>
<td>remote </td>
<td>SSRL cassettes ? </td>
<td>MAD ?</td>
<td>http://www.synchrotron.org.au/ </td>
</tr>

<tr>
<td>Australian Synchrotron </td>
<td>3ID (2009) </td>
<td>remote </td>
<td>SSRL cassettes ? </td>
<td>MAD ?</td>
<td>http://www.synchrotron.org.au/ </td>
</tr>

<tr>
<td>BNL/NSLS </td>
<td>six PXRR beamlines</td>
<td>Mail-in </td>
<td> ? </td>
<td> ? </td>
<td>http://www.px.nsls.bnl.gov/ http://www.px.nsls.bnl.gov/Mailin.html </td>
</tr>

<tr>
<td>CLS </td>
<td> ?</td>
<td>Mail-in </td>
<td>? </td>
<td>? </td>
<td>http://www.lightsource.ca/ </td>
</tr>

<tr>
<td>MacCHESS </td>
<td>all PX beamlines </td>
<td>Mail-in </td>
<td>ALS type puck ? </td>
<td>? </td>
<td>http://www.macchess.cornell.edu/ </td>
</tr>

<tr>
<td>ESRF </td>
<td>ID14-1 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>

<tr>
<td>ESRF </td>
<td>ID14-2 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID14-4 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID23-1 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID29 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>BM14 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>

<tr>
<td>ESRF </td>
<td>MXpress </td>
<td>Mail-in </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service </td>
</tr>

<tr>
<td>APS </td>
<td>SEC-CAT 22-ID </td>
<td>Mail-in & Remote </td>
<td>? </td>
<td>? </td>
<td>http://www.ser-cat.org/ </td>
</tr>

<tr>
<td>APS </td>
<td>SEC-CAT 22-BM </td>
<td>Mail-in & Remote </td>
<td>? </td>
<td>? </td>
<td>http://www.ser-cat.org/ </td>
</tr>

<tr>
<td>Spring8 </td>
<td>? </td>
<td>Mail-in </td>
<td> ?</td>
<td> ?</td>
<td>http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology </td>
</tr>

<tr>
<td>SSRL </td>
<td>all PX beamlines </td>
<td>remote </td>
<td> SSRL cassette and Uni-puck </td>
<td> 4 MAD, 2 Se-SAD </td>
<td>http://smb.slac.stanford.edu/ -- user guide[http://smb.slac.stanford.edu/public/users_guide/manual/Using_SSRL_Automated_Mounti.html automounter] and [http://smb.slac.stanford.edu/public/users_guide/manual/ contents] -- </td>
</tr>

<tr>
<td>CAMD </td>
<td>PX beamline </td>
<td>Mail-in </td>
<td> ?</td>
<td> ?</td>
<td>http://www.camd.lsu.edu/gcpcc/GCPCChome.htm </td>
</tr>

<tr>
<td>BESSY </td>
<td>BL14.1 </td>
<td>Mail-in (industrial) </td>
<td> ? </td>
<td> ?</td>
<td>http://www.mx.bessy.de/ </td>
</tr>

<tr>
<td>BESSY </td>
<td>BL14.2 </td>
<td>Mail-in (industrial) </td>
<td> ? </td>
<td> ?</td>
<td>http://www.mx.bessy.de/ </td>
</tr>

<tr>
<td>SLS </td>
<td> ?</td>
<td>Mail-in (industrial) </td>
<td> ?</td>
<td> ?</td>
<td>http://sls.web.psi.ch/ </td>
</tr>

<tr>
<td>APS </td>
<td>IMCA-CAT 17-ID </td>
<td>Mail-in; Remote (industrial) </td>
<td>ACTOR magazines </td>
<td>MAD </td>
<td>http://www.imca.aps.anl.gov/ </td>
</tr>

<tr>
<td>APS </td>
<td>IMCA-CAT 17-BM </td>
<td>Mail-in; Remote (industrial) </td>
<td>ACTOR magazines </td>
<td>MAD </td>
<td>http://www.imca.aps.anl.gov/ </td>
</tr>

<tr>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
</tr>

</table>

'''''Please copy and paste the empty row for the next person to fill in'''''

See also the [http://smb.slac.stanford.edu/facilities/hardware/SAM/robosync/ robosync page] on automounters at synchrotrons.

Synchrotrons

2008-07-26T18:32:27Z

Phzwart:

For a list of synchrotrons please see [http://www.esrf.eu/UsersAndScience/Links/Synchrotrons Synchrotron beamlines]

The following beamlines offer mail-in service or remote access:
(compiled from the CCP4 BB July 2008)

1. The ALS BCSB beamlines http://bcsb.lbl.gov/beamlines.htm have a mail-in type program name collaborative crystallography on beamlines 5.0.2 (MAD) and 5.0.1 (Se-SAD/ Fixed
Wavelength).
Remote access is currently available on the sector 5 stations (5.0.1
5.0.2 and 5.0.3) for PRT members only. ALS 4.2.2 beamline has remote capability

2. Beamline 3BM1 at the Australian Synchrotron http://www.synchrotron.org.au has full remote access available for users. We use the same Blu-Ice gui as SSRL and use the SAM robot.
When 3ID is available for general user program (2009) it will also have full remote access capabilities.

3. BNL / NSLS Mail-in program http://www.px.nsls.bnl.gov/, where three scientists spend about one full-time equivalent of effort, employing about one full-time beamline among the six PXRR beamlines.
Access to Beam Time http://www.px.nsls.bnl.gov/beamtime_requests.html Mail-in Program http://www.px.nsls.bnl.gov/Mailin.html

4. The canadian light source http://www.lightsource.ca/ has at least mail in protein crystallography.

5. MacCHESS http://www.macchess.cornell.edu/ does "mail-in" collection on all PX beamlines.

6. All the ESRF MX/PX beamlines (ID14-1, ID14-2, ID14-4, ID23-1, ID29), and the CRG beam-line BM14, have remote access.
http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
For industrial users there is also the MXpress mail in service:
http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service

7. SEC-CAT 22-ID and 22-BM at APS http://www.ser-cat.org/ will do both mail-in and remote

8. SPring8 in Japan http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology has a mail-in system.

9. SSRL http://smb.slac.stanford.edu/ all PX beamlines have [http://smb.slac.stanford.edu/public/facilities/remote_access/ remote capability]. About 75% of the users use fully remote data collection routinely

10. CAMD's PX beamline http://www.camd.lsu.edu/gcpcc/GCPCChome.htm has a mail-in program for both consortium members and outside users.

11. BESSY BL14.1 and BL14.2 http://www.mx.bessy.de, The BESSY-MX group is offering the "mail-in" service for industrial collaborators.

12. SLS (http://sls.web.psi.ch/): For industrial users there is a Mail-In Service available since more than 3 years. For technical questions please contact Joachim Diez (Joachim.Diez@psi.ch) or Clemens Schulze-Briese (clemens.schulze@psi.ch), for questions about contracts please contact Philipp Dietrich (philipp.dietrich@psi.ch). Remote operation is in preparation for all beamlines.

A useful link from PDB containing synchrotron info:
http://biosync.rcsb.org/

<table border = "1">
<tr>

<td>Synchrotron</td>
<td>Beamline</td>
<td>Mail-in/ Remote</td>
<td>type of puck</td>
<td>Fixed Wavelength/ Se-SAD/ MAD</td>
<td>URL</td>
</tr>
<tr>
<td>ALS</td>
<td>4.2.2 </td>
<td>Remote capabilities </td>
<td>ACTOR magazine </td>
<td> ? </td>
<td> http://www-als.lbl.gov/als/techspecs/bl4.2.2.html </td>
</tr>
<tr>

<td>ALS</td>
<td>5.0.1</td>
<td>Mail & Remote (PRT members)</td>
<td>ALS puck</td>
<td>Fixed Wavelength/ Se-SAD </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.1</td>
</tr>
<tr>
<td>ALS </td>
<td>5.0.2 </td>
<td>Mail & Remote (PRT members) </td>
<td>ALS puck </td>
<td>MAD </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.2</td>
</tr>
<tr>
<td>ALS</td>
<td>5.0.3 </td>
<td>Remote (PRT members) </td>
<td>ALS puck </td>
<td> Fixed Wavelength/ Se-SAD </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.3</td>
</tr>

<tr>
<td>Australian Synchrotron </td>
<td>3BM1 </td>
<td>remote </td>
<td>SSRL cassettes ? </td>
<td>MAD ?</td>
<td>http://www.synchrotron.org.au/ </td>
</tr>

<tr>
<td>Australian Synchrotron </td>
<td>3ID (2009) </td>
<td>remote </td>
<td>SSRL cassettes ? </td>
<td>MAD ?</td>
<td>http://www.synchrotron.org.au/ </td>
</tr>

<tr>
<td>BNL/NSLS </td>
<td>six PXRR beamlines</td>
<td>Mail-in </td>
<td> ? </td>
<td> ? </td>
<td>http://www.px.nsls.bnl.gov/ http://www.px.nsls.bnl.gov/Mailin.html </td>
</tr>

<tr>
<td>CLS </td>
<td> ?</td>
<td>Mail-in </td>
<td>? </td>
<td>? </td>
<td>http://www.lightsource.ca/ </td>
</tr>

<tr>
<td>MacCHESS </td>
<td>all PX beamlines </td>
<td>Mail-in </td>
<td>ALS type puck ? </td>
<td>? </td>
<td>http://www.macchess.cornell.edu/ </td>
</tr>

<tr>
<td>ESRF </td>
<td>ID14-1 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>

<tr>
<td>ESRF </td>
<td>ID14-2 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID14-4 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID23-1 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID29 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>BM14 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>

<tr>
<td>ESRF </td>
<td>MXpress </td>
<td>Mail-in </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service </td>
</tr>

<tr>
<td>APS </td>
<td>SEC-CAT 22-ID </td>
<td>Mail-in & Remote </td>
<td>? </td>
<td>? </td>
<td>http://www.ser-cat.org/ </td>
</tr>

<tr>
<td>APS </td>
<td>SEC-CAT 22-BM </td>
<td>Mail-in & Remote </td>
<td>? </td>
<td>? </td>
<td>http://www.ser-cat.org/ </td>
</tr>

<tr>
<td>Spring8 </td>
<td>? </td>
<td>Mail-in </td>
<td> ?</td>
<td> ?</td>
<td>http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology </td>
</tr>

<tr>
<td>SSRL </td>
<td>all PX beamlines </td>
<td>remote </td>
<td> SSRL cassette and Uni-puck </td>
<td> 4 MAD, 2 Se-SAD </td>
<td>http://smb.slac.stanford.edu/ -- user guide[http://smb.slac.stanford.edu/public/users_guide/manual/Using_SSRL_Automated_Mounti.html automounter] and [http://smb.slac.stanford.edu/public/users_guide/manual/ contents] -- </td>
</tr>

<tr>
<td>CAMD </td>
<td>PX beamline </td>
<td>Mail-in </td>
<td> ?</td>
<td> ?</td>
<td>http://www.camd.lsu.edu/gcpcc/GCPCChome.htm </td>
</tr>

<tr>
<td>BESSY </td>
<td>BL14.1 </td>
<td>Mail-in (industrial) </td>
<td> ? </td>
<td> ?</td>
<td>http://www.mx.bessy.de/ </td>
</tr>

<tr>
<td>BESSY </td>
<td>BL14.2 </td>
<td>Mail-in (industrial) </td>
<td> ? </td>
<td> ?</td>
<td>http://www.mx.bessy.de/ </td>
</tr>

<tr>
<td>SLS </td>
<td> ?</td>
<td>Mail-in (industrial) </td>
<td> ?</td>
<td> ?</td>
<td>http://sls.web.psi.ch/ </td>
</tr>

<tr>
<td>APS </td>
<td>IMCA-CAT 17-ID </td>
<td>Mail-in; Remote (industrial) </td>
<td>ACTOR magazines </td>
<td>MAD </td>
<td>http://www.imca.aps.anl.gov/ </td>
</tr>

<tr>
<td>APS </td>
<td>IMCA-CAT 17-BM </td>
<td>Mail-in; Remote (industrial) </td>
<td>ACTOR magazines </td>
<td>MAD </td>
<td>http://www.imca.aps.anl.gov/ </td>
</tr>

<tr>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
</tr>

</table>

'''''Please copy and paste the empty row for the next person to fill in'''''

See also the [http://smb.slac.stanford.edu/facilities/hardware/SAM/robosync/ robosync page] on automounters at synchrotrons.

Synchrotrons

2008-07-26T18:26:58Z

Phzwart:

For a list of synchrotrons please see [http://www.esrf.eu/UsersAndScience/Links/Synchrotrons Synchrotron beamlines]

The following beamlines offer mail-in service or remote access:
(compiled from the CCP4 BB July 2008)

1. The ALS BCSB beamlines http://bcsb.lbl.gov/beamlines.htm have a mail-in type program name collaborative crystallography on beamlines 5.0.2 (MAD) and 5.0.1 (Se-SAD/ Fixed
Wavelength).
Remote access is currently available on the sector 5 stations (5.0.1
5.0.2 and 5.0.3) for PRT members only. ALS 4.2.2 beamline has remote capability

2. Beamline 3BM1 at the Australian Synchrotron http://www.synchrotron.org.au has full remote access available for users. We use the same Blu-Ice gui as SSRL and use the SAM robot.
When 3ID is available for general user program (2009) it will also have full remote access capabilities.

3. BNL / NSLS Mail-in program http://www.px.nsls.bnl.gov/, where three scientists spend about one full-time equivalent of effort, employing about one full-time beamline among the six PXRR beamlines.
Access to Beam Time http://www.px.nsls.bnl.gov/beamtime_requests.html Mail-in Program http://www.px.nsls.bnl.gov/Mailin.html

4. The canadian light source http://www.lightsource.ca/ has at least mail in protein crystallography.

5. MacCHESS http://www.macchess.cornell.edu/ does "mail-in" collection on all PX beamlines.

6. All the ESRF MX/PX beamlines (ID14-1, ID14-2, ID14-4, ID23-1, ID29), and the CRG beam-line BM14, have remote access.
http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
For industrial users there is also the MXpress mail in service:
http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service

7. SEC-CAT 22-ID and 22-BM at APS http://www.ser-cat.org/ will do both mail-in and remote

8. SPring8 in Japan http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology has a mail-in system.

9. SSRL http://smb.slac.stanford.edu/ all PX beamlines have [http://smb.slac.stanford.edu/public/facilities/remote_access/ remote capability]. About 75% of the users use fully remote data collection routinely

10. CAMD's PX beamline http://www.camd.lsu.edu/gcpcc/GCPCChome.htm has a mail-in program for both consortium members and outside users.

11. BESSY BL14.1 and BL14.2 http://www.mx.bessy.de, The BESSY-MX group is offering the "mail-in" service for industrial collaborators.

12. SLS (http://sls.web.psi.ch/): For industrial users there is a Mail-In Service available since more than 3 years. For technical questions please contact Joachim Diez (Joachim.Diez@psi.ch) or Clemens Schulze-Briese (clemens.schulze@psi.ch), for questions about contracts please contact Philipp Dietrich (philipp.dietrich@psi.ch). Remote operation is in preparation for all beamlines.

A useful link from PDB containing synchrotron info:
http://biosync.rcsb.org/

<table border = "1">
<tr>

<td>Synchrotron</td>
<td>Beamline</td>
<td>Mail-in/ Remote</td>
<td>type of puck</td>
<td>Fixed Wavelength/ Se-SAD/ MAD</td>
<td>URL</td>
</tr>
<tr>
<td>ALS</td>
<td>4.2.2 </td>
<td>Remote capabilities </td>
<td>ACTOR magazine </td>
<td> ? </td>
<td> www-als.lbl.gov/als/techspecs/bl4.2.2.html </td>
</tr>
<tr>

<td>ALS</td>
<td>5.0.1</td>
<td>Mail & Remote (PRT members)</td>
<td>ALS puck</td>
<td>Fixed Wavelength/ Se-SAD </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.1</td>
</tr>
<tr>
<td>ALS </td>
<td>5.0.2 </td>
<td>Mail & Remote (PRT members) </td>
<td>ALS puck </td>
<td>MAD </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.2</td>
</tr>
<tr>
<td>ALS</td>
<td>5.0.3 </td>
<td>Remote (PRT members) </td>
<td>ALS puck </td>
<td> Fixed Wavelength/ Se-SAD </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.3</td>
</tr>

<tr>
<td>Australian Synchrotron </td>
<td>3BM1 </td>
<td>remote </td>
<td>SSRL cassettes ? </td>
<td>MAD ?</td>
<td>http://www.synchrotron.org.au/ </td>
</tr>

<tr>
<td>Australian Synchrotron </td>
<td>3ID (2009) </td>
<td>remote </td>
<td>SSRL cassettes ? </td>
<td>MAD ?</td>
<td>http://www.synchrotron.org.au/ </td>
</tr>

<tr>
<td>BNL/NSLS </td>
<td>six PXRR beamlines</td>
<td>Mail-in </td>
<td> ? </td>
<td> ? </td>
<td>http://www.px.nsls.bnl.gov/ http://www.px.nsls.bnl.gov/Mailin.html </td>
</tr>

<tr>
<td>CLS </td>
<td> ?</td>
<td>Mail-in </td>
<td>? </td>
<td>? </td>
<td>http://www.lightsource.ca/ </td>
</tr>

<tr>
<td>MacCHESS </td>
<td>all PX beamlines </td>
<td>Mail-in </td>
<td>ALS type puck ? </td>
<td>? </td>
<td>http://www.macchess.cornell.edu/ </td>
</tr>

<tr>
<td>ESRF </td>
<td>ID14-1 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>

<tr>
<td>ESRF </td>
<td>ID14-2 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID14-4 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID23-1 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID29 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>BM14 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>

<tr>
<td>ESRF </td>
<td>MXpress </td>
<td>Mail-in </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service </td>
</tr>

<tr>
<td>APS </td>
<td>SEC-CAT 22-ID </td>
<td>Mail-in & Remote </td>
<td>? </td>
<td>? </td>
<td>http://www.ser-cat.org/ </td>
</tr>

<tr>
<td>APS </td>
<td>SEC-CAT 22-BM </td>
<td>Mail-in & Remote </td>
<td>? </td>
<td>? </td>
<td>http://www.ser-cat.org/ </td>
</tr>

<tr>
<td>Spring8 </td>
<td>? </td>
<td>Mail-in </td>
<td> ?</td>
<td> ?</td>
<td>http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology </td>
</tr>

<tr>
<td>SSRL </td>
<td>all PX beamlines </td>
<td>remote </td>
<td> SSRL cassette and Uni-puck </td>
<td> 4 MAD, 2 Se-SAD </td>
<td>http://smb.slac.stanford.edu/ -- user guide[http://smb.slac.stanford.edu/public/users_guide/manual/Using_SSRL_Automated_Mounti.html automounter] and [http://smb.slac.stanford.edu/public/users_guide/manual/ contents] -- </td>
</tr>

<tr>
<td>CAMD </td>
<td>PX beamline </td>
<td>Mail-in </td>
<td> ?</td>
<td> ?</td>
<td>http://www.camd.lsu.edu/gcpcc/GCPCChome.htm </td>
</tr>

<tr>
<td>BESSY </td>
<td>BL14.1 </td>
<td>Mail-in (industrial) </td>
<td> ? </td>
<td> ?</td>
<td>http://www.mx.bessy.de/ </td>
</tr>

<tr>
<td>BESSY </td>
<td>BL14.2 </td>
<td>Mail-in (industrial) </td>
<td> ? </td>
<td> ?</td>
<td>http://www.mx.bessy.de/ </td>
</tr>

<tr>
<td>SLS </td>
<td> ?</td>
<td>Mail-in (industrial) </td>
<td> ?</td>
<td> ?</td>
<td>http://sls.web.psi.ch/ </td>
</tr>

<tr>
<td>APS </td>
<td>IMCA-CAT 17-ID </td>
<td>Mail-in; Remote (industrial) </td>
<td>ACTOR magazines </td>
<td>MAD </td>
<td>http://www.imca.aps.anl.gov/ </td>
</tr>

<tr>
<td>APS </td>
<td>IMCA-CAT 17-BM </td>
<td>Mail-in; Remote (industrial) </td>
<td>ACTOR magazines </td>
<td>MAD </td>
<td>http://www.imca.aps.anl.gov/ </td>
</tr>

<tr>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
</tr>

</table>

'''''Please copy and paste the empty row for the next person to fill in'''''

See also the [http://smb.slac.stanford.edu/facilities/hardware/SAM/robosync/ robosync page] on automounters at synchrotrons.

Synchrotrons

2008-07-26T18:26:28Z

Phzwart:

For a list of synchrotrons please see [http://www.esrf.eu/UsersAndScience/Links/Synchrotrons Synchrotron beamlines]

The following beamlines offer mail-in service or remote access:
(compiled from the CCP4 BB July 2008)

1. The ALS BCSB beamlines http://bcsb.lbl.gov/beamlines.htm have a mail-in type program name collaborative crystallography on beamlines 5.0.2 (MAD) and 5.0.1 (Se-SAD/ Fixed
Wavelength).
Remote access is currently available on the sector 5 stations (5.0.1
5.0.2 and 5.0.3) for PRT members only. ALS 4.2.2 beamline has remote capability

2. Beamline 3BM1 at the Australian Synchrotron http://www.synchrotron.org.au has full remote access available for users. We use the same Blu-Ice gui as SSRL and use the SAM robot.
When 3ID is available for general user program (2009) it will also have full remote access capabilities.

3. BNL / NSLS Mail-in program http://www.px.nsls.bnl.gov/, where three scientists spend about one full-time equivalent of effort, employing about one full-time beamline among the six PXRR beamlines.
Access to Beam Time http://www.px.nsls.bnl.gov/beamtime_requests.html Mail-in Program http://www.px.nsls.bnl.gov/Mailin.html

4. The canadian light source http://www.lightsource.ca/ has at least mail in protein crystallography.

5. MacCHESS http://www.macchess.cornell.edu/ does "mail-in" collection on all PX beamlines.

6. All the ESRF MX/PX beamlines (ID14-1, ID14-2, ID14-4, ID23-1, ID29), and the CRG beam-line BM14, have remote access.
http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
For industrial users there is also the MXpress mail in service:
http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service

7. SEC-CAT 22-ID and 22-BM at APS http://www.ser-cat.org/ will do both mail-in and remote

8. SPring8 in Japan http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology has a mail-in system.

9. SSRL http://smb.slac.stanford.edu/ all PX beamlines have [http://smb.slac.stanford.edu/public/facilities/remote_access/ remote capability]. About 75% of the users use fully remote data collection routinely

10. CAMD's PX beamline http://www.camd.lsu.edu/gcpcc/GCPCChome.htm has a mail-in program for both consortium members and outside users.

11. BESSY BL14.1 and BL14.2 http://www.mx.bessy.de, The BESSY-MX group is offering the "mail-in" service for industrial collaborators.

12. SLS (http://sls.web.psi.ch/): For industrial users there is a Mail-In Service available since more than 3 years. For technical questions please contact Joachim Diez (Joachim.Diez@psi.ch) or Clemens Schulze-Briese (clemens.schulze@psi.ch), for questions about contracts please contact Philipp Dietrich (philipp.dietrich@psi.ch). Remote operation is in preparation for all beamlines.

A useful link from PDB containing synchrotron info:
http://biosync.rcsb.org/

<table border = "1">
<tr>

<td>Synchrotron</td>
<td>Beamline</td>
<td>Mail-in/ Remote</td>
<td>type of puck</td>
<td>Fixed Wavelength/ Se-SAD/ MAD</td>
<td>URL</td>
</tr>
<tr>
<td>ALS</td>
<td>4.2.2 </td>
<td>Remote capabilities </td>
<td>ACTOR magazine </td>
<td> ? </td>
<td> www-als.lbl.gov/als/techspecs/bl4.2.2.html </td>
</tr>
<tr>

<td>ALS</td>
<td>5.0.1</td>
<td>Mail & Remote (PRT members)</td>
<td>ALS puck</td>
<td>Fixed Wavelength/ Se-SAD </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.1</td>
</tr>
<tr>
<td>ALS </td>
<td>5.0.2 </td>
<td>Mail & Remote (PRT members) </td>
<td>ALS puck </td>
<td>MAD </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.2</td>
</tr>
<tr>
<td>ALS</td>
<td>5.0.3 </td>
<td>Mail & Remote (PRT members) </td>
<td>ALS puck </td>
<td> Fixed Wavelength/ Se-SAD </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.3</td>
</tr>

<tr>
<td>Australian Synchrotron </td>
<td>3BM1 </td>
<td>remote </td>
<td>SSRL cassettes ? </td>
<td>MAD ?</td>
<td>http://www.synchrotron.org.au/ </td>
</tr>

<tr>
<td>Australian Synchrotron </td>
<td>3ID (2009) </td>
<td>remote </td>
<td>SSRL cassettes ? </td>
<td>MAD ?</td>
<td>http://www.synchrotron.org.au/ </td>
</tr>

<tr>
<td>BNL/NSLS </td>
<td>six PXRR beamlines</td>
<td>Mail-in </td>
<td> ? </td>
<td> ? </td>
<td>http://www.px.nsls.bnl.gov/ http://www.px.nsls.bnl.gov/Mailin.html </td>
</tr>

<tr>
<td>CLS </td>
<td> ?</td>
<td>Mail-in </td>
<td>? </td>
<td>? </td>
<td>http://www.lightsource.ca/ </td>
</tr>

<tr>
<td>MacCHESS </td>
<td>all PX beamlines </td>
<td>Mail-in </td>
<td>ALS type puck ? </td>
<td>? </td>
<td>http://www.macchess.cornell.edu/ </td>
</tr>

<tr>
<td>ESRF </td>
<td>ID14-1 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>

<tr>
<td>ESRF </td>
<td>ID14-2 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID14-4 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID23-1 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>ID29 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>
<tr>
<td>ESRF </td>
<td>BM14 </td>
<td>Remote </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access </td>
</tr>

<tr>
<td>ESRF </td>
<td>MXpress </td>
<td>Mail-in </td>
<td> ?</td>
<td> ?</td>
<td>http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service </td>
</tr>

<tr>
<td>APS </td>
<td>SEC-CAT 22-ID </td>
<td>Mail-in & Remote </td>
<td>? </td>
<td>? </td>
<td>http://www.ser-cat.org/ </td>
</tr>

<tr>
<td>APS </td>
<td>SEC-CAT 22-BM </td>
<td>Mail-in & Remote </td>
<td>? </td>
<td>? </td>
<td>http://www.ser-cat.org/ </td>
</tr>

<tr>
<td>Spring8 </td>
<td>? </td>
<td>Mail-in </td>
<td> ?</td>
<td> ?</td>
<td>http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology </td>
</tr>

<tr>
<td>SSRL </td>
<td>all PX beamlines </td>
<td>remote </td>
<td> SSRL cassette and Uni-puck </td>
<td> 4 MAD, 2 Se-SAD </td>
<td>http://smb.slac.stanford.edu/ -- user guide[http://smb.slac.stanford.edu/public/users_guide/manual/Using_SSRL_Automated_Mounti.html automounter] and [http://smb.slac.stanford.edu/public/users_guide/manual/ contents] -- </td>
</tr>

<tr>
<td>CAMD </td>
<td>PX beamline </td>
<td>Mail-in </td>
<td> ?</td>
<td> ?</td>
<td>http://www.camd.lsu.edu/gcpcc/GCPCChome.htm </td>
</tr>

<tr>
<td>BESSY </td>
<td>BL14.1 </td>
<td>Mail-in (industrial) </td>
<td> ? </td>
<td> ?</td>
<td>http://www.mx.bessy.de/ </td>
</tr>

<tr>
<td>BESSY </td>
<td>BL14.2 </td>
<td>Mail-in (industrial) </td>
<td> ? </td>
<td> ?</td>
<td>http://www.mx.bessy.de/ </td>
</tr>

<tr>
<td>SLS </td>
<td> ?</td>
<td>Mail-in (industrial) </td>
<td> ?</td>
<td> ?</td>
<td>http://sls.web.psi.ch/ </td>
</tr>

<tr>
<td>APS </td>
<td>IMCA-CAT 17-ID </td>
<td>Mail-in; Remote (industrial) </td>
<td>ACTOR magazines </td>
<td>MAD </td>
<td>http://www.imca.aps.anl.gov/ </td>
</tr>

<tr>
<td>APS </td>
<td>IMCA-CAT 17-BM </td>
<td>Mail-in; Remote (industrial) </td>
<td>ACTOR magazines </td>
<td>MAD </td>
<td>http://www.imca.aps.anl.gov/ </td>
</tr>

<tr>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
<td> </td>
</tr>

</table>

'''''Please copy and paste the empty row for the next person to fill in'''''

See also the [http://smb.slac.stanford.edu/facilities/hardware/SAM/robosync/ robosync page] on automounters at synchrotrons.

Talk:R-factors

2008-02-14T14:31:15Z

Phzwart: New page: The expression opf the Rmerge value did not indicate that one is dealing with unmerged data. an extra index j does the job

The expression opf the Rmerge value did not indicate that one is dealing with unmerged data. an extra index j does the job

R-factors

2008-02-14T14:28:51Z

Phzwart: /* Data quality indicators */

Historically, R-factors were introduced by ...

== Definitions ==
=== Data quality indicators ===
* Rsym and Rmerge : the formula for both is
<math>
R = \frac{\sum_{hkl} \sum_{j} \vert I_{hkl,j}-\langle I_{hkl}\rangle\vert}{\sum_{hkl} \sum_{j}I_{hkl,j}}
</math>
 
 
where <math>\langle I_{hkl}\rangle</math> is the average of symmetry- (or Friedel-) related observations of a unique reflection, and the summation is over all observations, leaving out those that have no symmetry mates (or Friedel) in the dataset.
* Redundancy-independant version of the above: Rmeas
* measuring quality of averaged intensities/amplitudes: Rp.i.m. and Rmrgd-F

=== Model quality indicators ===
* R and Rfree : the formula for both is
<math>
R=\frac{\sum_{hkl_{unique}}\vert F_{hkl}^{(obs)}-F_{hkl}^{(calc)}\vert}{\sum_{hkl_{unique}} F_{hkl}^{(obs)}}
</math>
 
 
where <math>F_{hkl}^{(obs)}</math> and <math>F_{hkl}^{(calc)}</math> have to be scaled w.r.t. each other. R and Rfree differ in the set of reflections they are calculated from: R is calculated for the [[working set]], whereas Rfree is calculated for the [[test set]].
== what do R-factors try to measure, and how to interpret their values? ==
* relative deviation of
=== Data quality ===
* typical values: ...
=== Model quality ===

== what kind of problems exist with these indicators? ==
- (Rsym / Rmerge ) should not be used, Rmeas should be used instead (explain why ?)

- R/Rfree and NCS: reflections in work and test set are not independant

Scattering

2008-02-07T17:24:42Z

Phzwart:

== Scattering by an electron ==

== Scattering by a pair of electrons ==

== Scattering by an atom ==

== Scattering by a molecule ==

== Scattering by a crystal ==

Scattering

2008-02-07T17:24:05Z

Phzwart: New page: == Scattering by an electron == == Scattering by a pair of electrons == == Scattering by an atom == == Scattering by a molecule == == Scattering bh a crystal ==

== Scattering by an electron ==

== Scattering by a pair of electrons ==

== Scattering by an atom ==

== Scattering by a molecule ==

== Scattering bh a crystal ==

Basics of Crystallography

2008-02-07T17:22:24Z

Phzwart:

* [[Scattering]]
* [[Anomalous scattering]]
* [[Friedel's law]]
* [[centric and acentric reflections]]
* [[choice of origin]]
* [[ways to index a diffraction pattern]]
* [[symmetry and space groups]]

User:Phzwart

2008-02-07T15:35:57Z

Phzwart: New page: I work at the [http://bcsb.als.lbl.gov BCSB]

I work at the [http://bcsb.als.lbl.gov BCSB]