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Custom building Coot from source code: Difference between revisions
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Custom building Coot from source code (edit)
Revision as of 20:29, 15 November 2008
, 15 November 2008revising section →First, [[Install CCP4 on Linux]].
Kevin Cowtan (talk | contribs) No edit summary |
(revising section →First, [[Install CCP4 on Linux]].) |
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This is an advanced task. Don't attempt it unless you are a Unix expert. The normal method installing Coot is to download a binary, or to use the autobuild scripts: [[Coot]]. | This is an advanced task. Don't attempt it unless you are a Unix expert. The normal method installing Coot is to download a binary, or to use the autobuild scripts: [[Coot]]. | ||
====First, [[Install | ====First, [[Install gpp4 and other dependencies on Linux]].==== | ||
Instead of using ccp4-onlylibs-dev, we want to use ssm, mmdb, gpp4 and clipper packages. | |||
To keep things tidy, I suggest installing everything into /usr/local/xtal | |||
Install these in the order described: | |||
=====mmdb===== | |||
wget http://www.ebi.ac.uk/~keb/cldoc/downloads/mmdb-1.19.tar.gz | |||
./configure --prefix=/usr/local/xtal --includedir=/usr/local/xtal/include | |||
make | |||
make install | |||
=====ssm===== | |||
wget ftp://ftp.bioxray.au.dk/pub/mok/src/ssm-0.1.tar.gz | |||
CPPFLAGS=-I/usr/local/xtal/include ./configure --prefix=/usr/local/xtal --includedir=/usr/local/xtal/include | |||
make | |||
make install | |||
=====gpp4===== | |||
wget ftp://ftp.bioxray.au.dk/pub/mok/src/gpp4-1.0.4.tar.gz | |||
CPPFLAGS=-I/usr/local/xtal/include ./configure --prefix=/usr/local/xtal --includedir=/usr/local/xtal/include | |||
make | |||
make install | |||
=====fftw===== | |||
We need to compile fftw in a way that differs from that used to make the standard linux distribution of fftw. So to do that, we will install our own in /usr/local/xtal/lib, so it will remain hidden from the rest of the system, unless directed to look for it there. | |||
ftp://ftp.fftw.org/pub/fftw/old/fftw-2.1.5.tar.gz | |||
CPPFLAGS=-I/usr/local/xtal/include ./configure --prefix=/usr/local/xtal --includedir=/usr/local/xtal/include --enable-float | |||
make | |||
make install | |||
=====clipper===== | |||
wget http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper20ac.latest.tar.gz | |||
CPPFLAGS=-I/usr/local/xtal/include ./configure --prefix=/usr/local/xtal --includedir=/usr/local/xtal/include -enable-shared --with-gpp4=/usr/local/xtal --with-mmdb=/usr/local/xtal --with-fftw=/usr/local/xtal --enable-mmdb --enable-minimol --enable-cif --enable-cns --enable-gpp4 | |||
make | make | ||
make install | make install | ||
=====guile-lib===== | |||
Yet another little guile fragment that is not distributed (well actually there is a very old one that works with guile1.4 — we need this for guile1.8) | |||
wget http://download.gna.org/guile-lib/guile-lib-0.1.6.tar.gz./configure --prefix=/usr | |||
make | |||
make install | |||
====Second, install a newer version of Clipper==== | ====Second, install a newer version of Clipper==== | ||