Coot: Difference between revisions

Coot (edit)

Revision as of 14:16, 2 February 2017

1,945 bytes removed , 2 February 2017

remove some obsolete stuff

Kay

Bureaucrats

1,330

edits

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 ==== Example: installing a 64bit nightly CentOS5 binary build on 64bit SL6.1 ====
 First of all, SL (Scientific Linux) is a derivative of RHEL, as is CentOS. So all three OSs behave exactly the same.
-The binaries with "x86_64" binaries are for 64bit systems; the "i386" binaries are for 32bit systems. Since my notebook is 64bits ("uname -a" reports "x86_64" more than once), I download ftp://turn5.biologie.uni-konstanz.de/coot/software/binaries/nightlies/pre-release/coot-0.7-pre-1-revision-3999-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz (the main server is slow, so I use the mirror). As root, I "cd /usr/local/src" and un-tar. Next, have to find out which libraries are missing. This can be achieved by (''note the use of LD_LIBRARY_PATH in the second command - do not permanently modify LD_LIBRARY_PATH !''):
+The binaries with "x86_64" binaries are for 64bit systems; the "i386" binaries are for 32bit systems. Since my notebook is 64bits ("uname -a" reports "x86_64" more than once), I download coot-0.7-pre-1-revision-3999-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz. As root, I "cd /usr/local/src" and un-tar. Next, have to find out which libraries are missing. This can be achieved by (''note the use of LD_LIBRARY_PATH in the second command - do not permanently modify LD_LIBRARY_PATH !''):
   [root@localhost]# cd coot-Linux-x86_64-centos-5-gtk2-python
   [root@localhost]# LD_LIBRARY_PATH=lib ldd bin/coot-real | grep found
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 and make it executable with
   chmod a+x /usr/local/bin/coot
-=== Installation on Debian/Ubuntu from debian archive files ===
-As an alternative, you might wish to exploit the debain dpkg/apt/synaptic package management system on Ubuntu and other Debian linux distributions using (unofficial)
-[http://diablo.ucsc.edu/~wgscott/debian/coot_hardy/  pre-compiled debian packages for coot and its dependencies]. (These will be discontinued when official packages become available.)
-To do so, simply download the deb files and install with the command
- sudo dpkg -i *.deb
-dpkg will complain if a dependency is missing rather than install a broken program.
-=== Packages for Ubuntu ===
-A pre-packaged version of Coot (0.7-pre-1) for Ubuntu is available from mok0's Personal Package Archive (PPA) on Launchpad. Currently, packages for Ubuntu 10.04 (Lucid) and 10.10 (Maverick) are available.
-To install the coot package on your system, you first need to install the public key for mok0's PPA:
-  sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 1DC81A57
-Next, add the PPA repository to your /etc/apt/sources.list file:
-  sudo add-apt-repository ppa:mok0/ppa
-That's it! Now, you should be able to:
-  apt-get update && apt-get install coot
-This version of Coot only supports the Python scripting language.
-=== Mandriva Installation ===
-To install the coot on Mandriva 2010.0 use the ubuntu distribution:
-tar zxf coot-0.6.2-binary-Linux-i686-ubuntu-8.04.1-python-gtk2.tar.gz
-in the .cshrc file:
-alias coot   'source /prog/CCP4/ccp4-6.1.13/include/ccp4.setup-csh ; /prog/coot-Linux-i686-ubuntu-8.04.1-gtk2-python/bin/coot'
-=== Converting to rpm packages ===
-You can convert any debian package file into an rpm file using the program ''alien''.  I have done this and have made the [http://diablo.ucsc.edu/~wgscott/debian/rpm/coot/ resulting packages] available.
 === Installation from source code via autobuild scripts ===

Coot: Difference between revisions

Coot (edit)

Revision as of 14:16, 2 February 2017

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