Custom building Coot from source code - Revision history

Kay: removed because it is 10 yrs old

2021-02-02T10:42:30Z

removed because it is 10 yrs old

2011-02-27T21:48:19Z

Undo revision 1930 by Mok (talk)

@@ Line 68: / Line 68: @@
 ===Ubuntu packages===
-A pre-packaged version of Coot (0.7-pre-1) for Ubuntu is available from mok0's Personal Package Archive (PPA) on Launchpad. Currently, packages for Ubuntu 10.04 (Lucid) and 10.10 (Maverick) are available.
+A [[list of coot dependencies]] that is probably only a subset
 ===Others that you have to make yourself: ===

2011-02-27T21:45:17Z

Explain how to install mok0's Coot package for Ubuntu

@@ Line 68: / Line 68: @@
 ===Ubuntu packages===
-A [[list of coot dependencies]] that is probably only a subset
+A pre-packaged version of Coot (0.7-pre-1) for Ubuntu is available from mok0's Personal Package Archive (PPA) on Launchpad. Currently, packages for Ubuntu 10.04 (Lucid) and 10.10 (Maverick) are available.
 ===Others that you have to make yourself: ===

2011-02-27T21:36:50Z

correct to new gpp4 distribution at launchpad.net

← Older revision		Revision as of 23:36, 27 February 2011
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	===gpp4===		===gpp4===
	wget ~~ftp~~://~~ftp~~.~~bioxray~~.au.dk/~~pub/mok/src~~/gpp4-1.0.4.tar.gz		wget http://launchpad.net/gpp4/1.3/1.3.1/+download/gpp4-1.3.1.tar.gz
	CPPFLAGS=-I/usr/local/xtal/include ./configure --prefix=/usr/local/xtal --includedir=/usr/local/xtal/include		CPPFLAGS=-I/usr/local/xtal/include ./configure --prefix=/usr/local/xtal --includedir=/usr/local/xtal/include
	make		make

2009-05-08T23:15:12Z

To make it play nice with python, I have had to do the following:

← Older revision		Revision as of 01:15, 9 May 2009
Line 140:		Line 140:

	===To make it play nice with python, I have had to do the following: ===		===To make it play nice with python, I have had to do the following: ===
	perl pi -e 's\|PYTHONHOME=\$COOT_PREFIX\|\#PYTHONHOME=\$COOT_PREFIX\|g' bin/coot		perl -pi -e 's\|PYTHONHOME=\$COOT_PREFIX\|\#PYTHONHOME=\$COOT_PREFIX\|g' bin/coot
	cp src/coot.py python/.		cp src/coot.py python/.
	cp src/coot.py share/coot/python/.		cp src/coot.py share/coot/python/.

	===Now add the reference structures: ===		===Now add the reference structures: ===
	cd share/coot		cd share/coot

2008-12-22T19:19:29Z

Now add the refmac dictionaries

← Older revision		Revision as of 21:19, 22 December 2008
Line 153:		Line 153:

	cd /tmp		cd /tmp
	~~wget~~ wget http://www.ysbl.york.ac.uk/refmac/data/~~refmac5.4_dictionary~~.tar.gz		wget http://www.ysbl.york.ac.uk/refmac/data/refmac_dictionary.tar.gz
	tar xvfz ~~refmac5.4_dictionary~~.tar.gz		tar xvfz refmac_dictionary.tar.gz
	mkdir -p /usr/local/xtal/coot-0.5/lib/data		mkdir -p /usr/local/xtal/coot-0.5.2/lib/data
	cp -r dic /usr/local/xtal/coot-0.5/lib/data/monomers		cp -r dic /usr/local/xtal/coot-0.5.2/lib/data/monomers

	===Export the COOT_REFMAC_LIB_DIR variable ===		===Export the COOT_REFMAC_LIB_DIR variable ===

2008-11-16T19:57:18Z

added link Coot#Installation_from_a_distributed_binary_tarball_package

← Older revision		Revision as of 21:57, 16 November 2008
Line 5:		Line 5:
	The following is specific to Ubuntu linux, but should be generalizable to any recent linux distribution.		The following is specific to Ubuntu linux, but should be generalizable to any recent linux distribution.

	'''This is a so-called "advanced" task. Don't attempt it unless you would rather compile your own software than use pre-compiled versions. The standard (supported) method for installing Coot is to download a pre-compiled binary, or to use [[Coot#Installation_from_source_code_via_autobuild_scripts \|the autobuild scripts]].'''		'''This is a so-called "advanced" task. Don't attempt it unless you would rather compile your own software than use pre-compiled versions. The standard (supported) method for installing Coot is to [[Coot#Installation_from_a_distributed_binary_tarball_package \|download a pre-compiled binary]], or to use [[Coot#Installation_from_source_code_via_autobuild_scripts \|the autobuild scripts]].'''

	==Installing pre-compiled Coot binaries==		==Installing pre-compiled Coot binaries==

2008-11-16T19:56:02Z

better link to autobuild scripts

← Older revision		Revision as of 21:56, 16 November 2008
Line 5:		Line 5:
	The following is specific to Ubuntu linux, but should be generalizable to any recent linux distribution.		The following is specific to Ubuntu linux, but should be generalizable to any recent linux distribution.

	'''This is a so-called "advanced" task. Don't attempt it unless you would rather compile your own software than use pre-compiled versions. The standard (supported) method for installing Coot is to download a pre-compiled binary, or to use the autobuild scripts:''' ~~[[Coot]].~~		'''This is a so-called "advanced" task. Don't attempt it unless you would rather compile your own software than use pre-compiled versions. The standard (supported) method for installing Coot is to download a pre-compiled binary, or to use [[Coot#Installation_from_source_code_via_autobuild_scripts \|the autobuild scripts]].'''

	==Installing pre-compiled Coot binaries==		==Installing pre-compiled Coot binaries==

2008-11-16T19:53:27Z

Avoiding manual installation

← Older revision		Revision as of 21:53, 16 November 2008
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	===Avoiding manual installation===		===Avoiding manual installation===

	This page describes full manual installation, for those who want (or need) to do it. It is not necessary on most systems. For autobuild and for installation of precompiled Coot binaries, see [[Coot#Installing_Coot]]		This page describes full manual installation, for those who want (or need) to do it. It is not necessary on most systems. For autobuild and for installation of precompiled Coot binaries, see [[Coot#Installing_Coot \| Installing Coot]]

	===Debian packages for Coot and its Dependencies===		===Debian packages for Coot and its Dependencies===

2008-11-16T19:52:17Z

← Older revision		Revision as of 21:52, 16 November 2008
Line 5:		Line 5:
	The following is specific to Ubuntu linux, but should be generalizable to any recent linux distribution.		The following is specific to Ubuntu linux, but should be generalizable to any recent linux distribution.

	This is a so-called "advanced" task. Don't attempt it unless you would rather compile your own software than use pre-compiled versions. The standard (supported) method for installing Coot is to download a pre-compiled binary, or to use the autobuild scripts: [[Coot]].		'''This is a so-called "advanced" task. Don't attempt it unless you would rather compile your own software than use pre-compiled versions. The standard (supported) method for installing Coot is to download a pre-compiled binary, or to use the autobuild scripts:''' [[Coot]].

	==Installing pre-compiled Coot binaries==		==Installing pre-compiled Coot binaries==