Bioinformatics: Difference between revisions
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* [http://www.csd.abdn.ac.uk/~dritchie/ Dave Ritchie's Hex program] - it is blisteringly quick | * [http://www.csd.abdn.ac.uk/~dritchie/ Dave Ritchie's Hex program] - it is blisteringly quick | ||
* [http://www.nmr.chem.uu.nl/haddock/ Haddock] - recommended by Tassos | * [http://www.nmr.chem.uu.nl/haddock/ Haddock] - recommended by Tassos | ||
* [http://autodock.scripps.edu/ AutoDock] - Wiki at https://www.nbcr.net/pub/wiki/index.php?title=AutoDock | |||
== Other stuff == | == Other stuff == | ||
Revision as of 16:00, 12 July 2008
Sequence only
Sequence to structure
Structure to Sequence
Structure only
- Servers for ligand topologies/parameters
- Servers and programs for protein structure analysis
- Programs for nucleic acid structure analysis
- Morphing
Docking
- ClusPro - easy to use web interface
- Rosetta can do much more than just docking, but is difficult to use
- 3D-dock - uses an algorithm that mainly looks at surface complimentarity between the two proteins
- Dave Ritchie's Hex program - it is blisteringly quick
- Haddock - recommended by Tassos
- AutoDock - Wiki at https://www.nbcr.net/pub/wiki/index.php?title=AutoDock
Other stuff
- Programs for visualization (see also Model building)