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| ==== Example: installing a 64bit nightly CentOS5 binary build on 64bit SL6.1 ==== | | ==== Example: installing a 64bit nightly CentOS5 binary build on 64bit SL6.1 ==== |
| First of all, SL (Scientific Linux) is a derivative of RHEL, as is CentOS. So all three OSs behave exactly the same. | | First of all, SL (Scientific Linux) is a derivative of RHEL, as is CentOS. So all three OSs behave exactly the same. |
| The binaries with "x86_64" binaries are for 64bit systems; the "i386" binaries are for 32bit systems. Since my notebook is 64bits ("uname -a" reports "x86_64" more than once), I download ftp://turn5.biologie.uni-konstanz.de/coot/software/binaries/nightlies/pre-release/coot-0.7-pre-1-revision-3999-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz (the main server is slow, so I use the mirror). As root, I "cd /usr/local/src" and un-tar. Next, have to find out which libraries are missing. This can be achieved by (''note the use of LD_LIBRARY_PATH in the second command - do not permanently modify LD_LIBRARY_PATH !''): | | The binaries with "x86_64" binaries are for 64bit systems; the "i386" binaries are for 32bit systems. Since my notebook is 64bits ("uname -a" reports "x86_64" more than once), I download coot-0.7-pre-1-revision-3999-binary-Linux-x86_64-centos-5-python-gtk2.tar.gz. As root, I "cd /usr/local/src" and un-tar. Next, have to find out which libraries are missing. This can be achieved by (''note the use of LD_LIBRARY_PATH in the second command - do not permanently modify LD_LIBRARY_PATH !''): |
| [root@localhost]# cd coot-Linux-x86_64-centos-5-gtk2-python | | [root@localhost]# cd coot-Linux-x86_64-centos-5-gtk2-python |
| [root@localhost]# LD_LIBRARY_PATH=lib ldd bin/coot-real | grep found | | [root@localhost]# LD_LIBRARY_PATH=lib ldd bin/coot-real | grep found |
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| and make it executable with | | and make it executable with |
| chmod a+x /usr/local/bin/coot | | chmod a+x /usr/local/bin/coot |
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| === Installation on Debian/Ubuntu from debian archive files ===
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| As an alternative, you might wish to exploit the debain dpkg/apt/synaptic package management system on Ubuntu and other Debian linux distributions using (unofficial)
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| [http://diablo.ucsc.edu/~wgscott/debian/coot_hardy/ pre-compiled debian packages for coot and its dependencies]. (These will be discontinued when official packages become available.)
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| To do so, simply download the deb files and install with the command
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| sudo dpkg -i *.deb
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| dpkg will complain if a dependency is missing rather than install a broken program.
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| === Packages for Ubuntu ===
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| A pre-packaged version of Coot (0.7-pre-1) for Ubuntu is available from mok0's Personal Package Archive (PPA) on Launchpad. Currently, packages for Ubuntu 10.04 (Lucid) and 10.10 (Maverick) are available.
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| To install the coot package on your system, you first need to install the public key for mok0's PPA:
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| sudo apt-key adv --keyserver keyserver.ubuntu.com --recv-keys 1DC81A57
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| Next, add the PPA repository to your /etc/apt/sources.list file:
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| sudo add-apt-repository ppa:mok0/ppa
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| That's it! Now, you should be able to:
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| apt-get update && apt-get install coot
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| This version of Coot only supports the Python scripting language.
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| === Mandriva Installation ===
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| To install the coot on Mandriva 2010.0 use the ubuntu distribution:
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| tar zxf coot-0.6.2-binary-Linux-i686-ubuntu-8.04.1-python-gtk2.tar.gz
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| in the .cshrc file:
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| alias coot 'source /prog/CCP4/ccp4-6.1.13/include/ccp4.setup-csh ; /prog/coot-Linux-i686-ubuntu-8.04.1-gtk2-python/bin/coot'
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| === Converting to rpm packages ===
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| You can convert any debian package file into an rpm file using the program ''alien''. I have done this and have made the [http://diablo.ucsc.edu/~wgscott/debian/rpm/coot/ resulting packages] available.
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| === Installation from source code via autobuild scripts === | | === Installation from source code via autobuild scripts === |