Topics: Difference between revisions

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== Expression and Purification ==
'''This page is now obsolete since it was creating before too much of hierarchy structure. Use the Navigation Panel in the Side Bar instead.'''
* [[Expression systems]]
* [[Purification]]
* [[Cleavage: wanted and unwanted]]
* [[DNA and DNA-binding proteins]]
* [[Expression and Purification: Tips and Tricks]]


== Crystals ==
--[[User:3ND03P|3ND03P]] 09:40, 5 March 2008 (CET)
 
=== Crystal growth and manipulation ===
* [[Crystallization screens and methods]]
* [[Robots for crystallization setup]]
* [[Visualization of crystal growth]]
* [[Robots for crystal mounting]]
* [[Crystal growth: Tips and Tricks]]
 
=== Data collection ===
* [[Synchrotron beamlines]]
* [[Cryo]]
* [[Strategies]]
* [[Data quality]]
 
== Crystallography ==
 
=== Theory ===
* [[Basics of Crystallography]]
* [[Phase problem]], and [[Phasing]]
* [[R-factors]]
* [[References and links]]
 
=== Programs ===
==== by package ====
(large packages first)
* [[CCP4]]
* [[CNS]]
* [[PHENIX]]
* [[SHELX C/D/E/L]] (homepage at [http://shelx.uni-ac.gwdg.de/SHELX])
* moleman, lsqman, ... from [http://xray.bmc.uu.se/usf/ Uppsala Software Factory]
* XDS [http://www.mpimf-heidelberg.mpg.de/~kabsch/xds homepage] and [http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/XDS XDSwiki]
* HKL [http://www.hkl-xray.com homepage]
* ...
 
==== by task ====
* [[Data reduction]]
* [[Molecular replacement (MR)]]
* [[Experimental phasing (SIR/MIR and SAD/MAD)]]
* [[Model building and validation]]
* [[Refinement]]
 
=== Hardware: computing and sychrotrons ===
 
 
== Bioinformatics and computers ==
* [[Servers and programs for sequence analysis (e.g. alignment)]]
* [[Servers and programs for protein structure analysis]]
* [[Servers for ligand topologies/parameters]]
* [[Prediction of structure from sequence: servers and programs]]
* [[Visualization: programs, graphics cards and 3D]]
* [[Computer hardware]]
* [[Operating systems and Linux distributions]]
 
 
== FAQ and troubleshooting ==
* [[Protein expression|protein is not expressed]]
* [[Crystal growth: Tips and Tricks|crystals don't grow]]
* [[Model building and validation|phases too bad]]
* [[Refinement|model does not refine]]

Latest revision as of 09:41, 5 March 2008

This page is now obsolete since it was creating before too much of hierarchy structure. Use the Navigation Panel in the Side Bar instead.

--3ND03P 09:40, 5 March 2008 (CET)

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