Synchrotrons: Difference between revisions

From CCP4 wiki
Jump to navigation Jump to search
No edit summary
mNo edit summary
 
(12 intermediate revisions by 5 users not shown)
Line 17: Line 17:
4.  The canadian light source http://www.lightsource.ca/ has at least mail in protein crystallography.  
4.  The canadian light source http://www.lightsource.ca/ has at least mail in protein crystallography.  


5.  MacCHESS http://www.macchess.cornell.edu/ does "mail-in" collection on all PX beamlines.
5.  MacCHESS http://www.macchess.cornell.edu/ does "remote" collection on MX beamline F1, monochromatic wavelength set near Se edge.


6.  All the ESRF MX/PX beamlines (ID14-1, ID14-2, ID14-4, ID23-1, ID29), and the CRG beam-line BM14, have remote access.
6.  All the ESRF MX/PX beamlines (ID14-1, ID14-2, ID14-4, ID23-1, ID29), and the CRG beam-line BM14, have remote access.
Line 24: Line 24:
http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service
http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service


7.  SEC-CAT 22-ID and 22-BM at APS http://www.ser-cat.org/ will do both mail-in and remote
7.  SEC-CAT 22-ID and 22-BM at APS http://www.ser-cat.org/ will do both mail-in (for CAT members) and remote


8.  SPring8 in Japan http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology has a mail-in system.
8.  SPring8 in Japan http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology has a mail-in system.
Line 37: Line 37:


A useful link from PDB containing synchrotron info:
A useful link from PDB containing synchrotron info:
http://biosync.rcsb.org/
http://biosync.rcsb.org/ e.g. to find info on number of solved structures, method, and so on: choose one of the structure galleries, for example Europe:
 
http://biosync.sbkb.org/stats.do?stats_sec=GALLRY&stats_focus_lvl=RGNL&stats_region=European
 
Then choose a beamline, say ID23-1:
 
http://biosync.sbkb.org/stats.do?stats_sec=GALLRY&stats_focus_lvl=BMLN&stats_site=ESRF&stats_bmln=ID23-1
 
Then, near the top of the page, see the line "Table of general information
(software, resolution, R-factors, etc) in tab delimited text format"
 
http://biosync.sbkb.org/biosync_pdbtext/measureESRFID23-1.txt
 
You'll get a table where the solution method and software follows the
PDB_ID.  There's a RELEASE DATE at the end on which you may sort.
 
 




Line 54: Line 70:
<td>4.2.2 </td>
<td>4.2.2 </td>
<td>Remote capabilities </td>
<td>Remote capabilities </td>
<td>ALS puck ? </td>
<td>ACTOR magazine </td>
<td> ? </td>
<td> MAD </td>
<td>http://bcsb.lbl.gov/beamlines.htm </td>
<td> http://www-als.lbl.gov/als/techspecs/bl4.2.2.html  </td>
</tr>
</tr>
<tr>
<tr>
Line 63: Line 79:
<td>5.0.1</td>
<td>5.0.1</td>
<td>Mail & Remote (PRT members)</td>
<td>Mail & Remote (PRT members)</td>
<td>ALS puck</td>
<td>ALS puck and Uni-puck</td>
<td>Fixed Wavelength/ Se-SAD/</td>
<td>Fixed Wavelength/ Se-SAD </td>
<td>http://bcsb.lbl.gov/beamlines.htm</td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.1</td>
</b></tr>
</b></tr>
<tr>
<tr>
Line 71: Line 87:
<td>5.0.2 </td>
<td>5.0.2 </td>
<td>Mail & Remote (PRT members) </td>
<td>Mail & Remote (PRT members) </td>
<td>ALS puck </td>
<td>ALS puck and Uni-puck</td>
<td>MAD </td>
<td>MAD </td>
<td>http://bcsb.lbl.gov/beamlines.htm </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.2</td>
</tr>
</tr>
<tr>
<tr>
<td>ALS</td>
<td>ALS</td>
<td>5.0.3 </td>
<td>5.0.3 </td>
<td>Mail & Remote (PRT members) </td>
<td>Remote (PRT members) </td>
<td>ALS puck </td>
<td>ALS puck and Uni-puck</td>
<td> ? </td>
<td> Fixed Wavelength/ Se-SAD </td>
<td>http://bcsb.lbl.gov/beamlines.htm </td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/5.0.3</td>
</tr>
<td>ALS</td>
<td>8.2.1 </td>
<td>?</td>
<td>ALS Puck, Uni-Puck and ACTOR magazines</td>
<td>MAD</td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/8.2.1 and [http://bcsb.als.lbl.gov/wiki/index.php/Automounter automonter] notes</td>
</tr>
<tr>
<td>ALS</td>
<td>8.2.2 </td>
<td>?</td>
<td>ALS Puck, Uni-Puck and ACTOR magazines</td>
<td>MAD</td>
<td>http://bcsb.als.lbl.gov/wiki/index.php/8.2.2 and [http://bcsb.als.lbl.gov/wiki/index.php/Automounter automonter] notes</td>
</tr>
</tr>


Line 122: Line 153:
<tr>
<tr>
<td>MacCHESS </td>
<td>MacCHESS </td>
<td>all PX beamlines </td>
<td>F1 </td>
<td>Mail-in </td>
<td>Remote </td>
<td>ALS type puck ? </td>
<td>ALS puck, Uni-puck and ACTOR pucks </td>
<td>? </td>
<td>Fixed Wavelength/ Se-SAD </td>
<td>http://www.macchess.cornell.edu/ </td>
<td>http://www.macchess.cornell.edu/ </td>
</tr>
</tr>
Line 192: Line 223:
<td>SEC-CAT 22-ID </td>
<td>SEC-CAT 22-ID </td>
<td>Mail-in & Remote </td>
<td>Mail-in & Remote </td>
<td>? </td>
<td>ALS Puck (14?)</td>
<td>? </td>
<td>MAD</td>
<td>http://www.ser-cat.org/ </td>
<td>http://www.ser-cat.org/ </td>
</tr>
</tr>
Line 201: Line 232:
<td>SEC-CAT 22-BM </td>
<td>SEC-CAT 22-BM </td>
<td>Mail-in & Remote </td>
<td>Mail-in & Remote </td>
<td>? </td>
<td>ALS Puck (6)</td>
<td>? </td>
<td>MAD</td>
<td>http://www.ser-cat.org/ </td>
<td>http://www.ser-cat.org/ </td>
</tr>
</tr>
Line 219: Line 250:
<td>all PX beamlines </td>
<td>all PX beamlines </td>
<td>remote </td>
<td>remote </td>
<td> SSRL cassette </td>
<td> SSRL cassette and Uni-puck </td>
<td> ? </td>
<td> 4 MAD, 2 Se-SAD </td>
<td>http://smb.slac.stanford.edu/ </td>
<td>http://smb.slac.stanford.edu/ -- user guide[http://smb.slac.stanford.edu/public/users_guide/manual/Using_SSRL_Automated_Mounti.html automounter] and [http://smb.slac.stanford.edu/public/users_guide/manual/ contents] -- </td>
</tr>
</tr>


Line 229: Line 260:
<td>Mail-in </td>
<td>Mail-in </td>
<td> ?</td>
<td> ?</td>
<td> ?</td>
<td>MAD</td>
<td>http://www.camd.lsu.edu/gcpcc/GCPCChome.htm </td>
<td>http://www.camd.lsu.edu/gcpcc/GCPCChome.htm </td>
</tr>
</tr>
Line 290: Line 321:


'''''Please copy and paste the empty row for the next person to fill in'''''
'''''Please copy and paste the empty row for the next person to fill in'''''
See also the [http://smb.slac.stanford.edu/facilities/hardware/SAM/robosync/ robosync page] on automounters at synchrotrons.

Latest revision as of 20:28, 26 January 2017

For a list of synchrotrons please see Synchrotron beamlines

The following beamlines offer mail-in service or remote access: (compiled from the CCP4 BB July 2008)

1. The ALS BCSB beamlines http://bcsb.lbl.gov/beamlines.htm have a mail-in type program name collaborative crystallography on beamlines 5.0.2 (MAD) and 5.0.1 (Se-SAD/ Fixed Wavelength). Remote access is currently available on the sector 5 stations (5.0.1 5.0.2 and 5.0.3) for PRT members only. ALS 4.2.2 beamline has remote capability

2. Beamline 3BM1 at the Australian Synchrotron http://www.synchrotron.org.au has full remote access available for users. We use the same Blu-Ice gui as SSRL and use the SAM robot. When 3ID is available for general user program (2009) it will also have full remote access capabilities.

3. BNL / NSLS Mail-in program http://www.px.nsls.bnl.gov/, where three scientists spend about one full-time equivalent of effort, employing about one full-time beamline among the six PXRR beamlines. Access to Beam Time http://www.px.nsls.bnl.gov/beamtime_requests.html Mail-in Program http://www.px.nsls.bnl.gov/Mailin.html

4. The canadian light source http://www.lightsource.ca/ has at least mail in protein crystallography.

5. MacCHESS http://www.macchess.cornell.edu/ does "remote" collection on MX beamline F1, monochromatic wavelength set near Se edge.

6. All the ESRF MX/PX beamlines (ID14-1, ID14-2, ID14-4, ID23-1, ID29), and the CRG beam-line BM14, have remote access. http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access For industrial users there is also the MXpress mail in service: http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service

7. SEC-CAT 22-ID and 22-BM at APS http://www.ser-cat.org/ will do both mail-in (for CAT members) and remote

8. SPring8 in Japan http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology has a mail-in system.

9. SSRL http://smb.slac.stanford.edu/ all PX beamlines have remote capability. About 75% of the users use fully remote data collection routinely

10. CAMD's PX beamline http://www.camd.lsu.edu/gcpcc/GCPCChome.htm has a mail-in program for both consortium members and outside users.

11. BESSY BL14.1 and BL14.2 http://www.mx.bessy.de, The BESSY-MX group is offering the "mail-in" service for industrial collaborators.

12. SLS (http://sls.web.psi.ch/): For industrial users there is a Mail-In Service available since more than 3 years. For technical questions please contact Joachim Diez (Joachim.Diez@psi.ch) or Clemens Schulze-Briese (clemens.schulze@psi.ch), for questions about contracts please contact Philipp Dietrich (philipp.dietrich@psi.ch). Remote operation is in preparation for all beamlines.

A useful link from PDB containing synchrotron info: http://biosync.rcsb.org/ e.g. to find info on number of solved structures, method, and so on: choose one of the structure galleries, for example Europe:

http://biosync.sbkb.org/stats.do?stats_sec=GALLRY&stats_focus_lvl=RGNL&stats_region=European

Then choose a beamline, say ID23-1:

http://biosync.sbkb.org/stats.do?stats_sec=GALLRY&stats_focus_lvl=BMLN&stats_site=ESRF&stats_bmln=ID23-1

Then, near the top of the page, see the line "Table of general information (software, resolution, R-factors, etc) in tab delimited text format"

http://biosync.sbkb.org/biosync_pdbtext/measureESRFID23-1.txt

You'll get a table where the solution method and software follows the PDB_ID. There's a RELEASE DATE at the end on which you may sort.



Synchrotron Beamline Mail-in/ Remote type of puck Fixed Wavelength/ Se-SAD/ MAD URL
ALS 4.2.2 Remote capabilities ACTOR magazine MAD http://www-als.lbl.gov/als/techspecs/bl4.2.2.html
ALS 5.0.1 Mail & Remote (PRT members) ALS puck and Uni-puck Fixed Wavelength/ Se-SAD http://bcsb.als.lbl.gov/wiki/index.php/5.0.1
ALS 5.0.2 Mail & Remote (PRT members) ALS puck and Uni-puck MAD http://bcsb.als.lbl.gov/wiki/index.php/5.0.2
ALS 5.0.3 Remote (PRT members) ALS puck and Uni-puck Fixed Wavelength/ Se-SAD http://bcsb.als.lbl.gov/wiki/index.php/5.0.3
ALS 8.2.1 ? ALS Puck, Uni-Puck and ACTOR magazines MAD http://bcsb.als.lbl.gov/wiki/index.php/8.2.1 and automonter notes
ALS 8.2.2 ? ALS Puck, Uni-Puck and ACTOR magazines MAD http://bcsb.als.lbl.gov/wiki/index.php/8.2.2 and automonter notes
Australian Synchrotron 3BM1 remote SSRL cassettes ? MAD ? http://www.synchrotron.org.au/
Australian Synchrotron 3ID (2009) remote SSRL cassettes ? MAD ? http://www.synchrotron.org.au/
BNL/NSLS six PXRR beamlines Mail-in  ?  ? http://www.px.nsls.bnl.gov/ http://www.px.nsls.bnl.gov/Mailin.html
CLS  ? Mail-in ? ? http://www.lightsource.ca/
MacCHESS F1 Remote ALS puck, Uni-puck and ACTOR pucks Fixed Wavelength/ Se-SAD http://www.macchess.cornell.edu/
ESRF ID14-1 Remote  ?  ? http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
ESRF ID14-2 Remote  ?  ? http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
ESRF ID14-4 Remote  ?  ? http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
ESRF ID23-1 Remote  ?  ? http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
ESRF ID29 Remote  ?  ? http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
ESRF BM14 Remote  ?  ? http://www.esrf.eu/UsersAndScience/Experiments/MX/How_to_use_our_beamlines/remote-access
ESRF MXpress Mail-in  ?  ? http://www.esrf.eu/Industry/our_services/xpress-service/xpress-service
APS SEC-CAT 22-ID Mail-in & Remote ALS Puck (14?) MAD http://www.ser-cat.org/
APS SEC-CAT 22-BM Mail-in & Remote ALS Puck (6) MAD http://www.ser-cat.org/
Spring8 ? Mail-in  ?  ? http://www.spring8.or.jp/en/about_us/organization/research_utilization/biology
SSRL all PX beamlines remote SSRL cassette and Uni-puck 4 MAD, 2 Se-SAD http://smb.slac.stanford.edu/ -- user guideautomounter and contents --
CAMD PX beamline Mail-in  ? MAD http://www.camd.lsu.edu/gcpcc/GCPCChome.htm
BESSY BL14.1 Mail-in (industrial)  ?  ? http://www.mx.bessy.de/
BESSY BL14.2 Mail-in (industrial)  ?  ? http://www.mx.bessy.de/
SLS  ? Mail-in (industrial)  ?  ? http://sls.web.psi.ch/
APS IMCA-CAT 17-ID Mail-in; Remote (industrial) ACTOR magazines MAD http://www.imca.aps.anl.gov/
APS IMCA-CAT 17-BM Mail-in; Remote (industrial) ACTOR magazines MAD http://www.imca.aps.anl.gov/

Please copy and paste the empty row for the next person to fill in

See also the robosync page on automounters at synchrotrons.

Retrieved from "https://wiki.uni-konstanz.de/ccp4/index.php?title=Synchrotrons&oldid=2430"