Topology plots: Difference between revisions
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Espript will produce nice Postscript plots from aligned sequences, highlighting secondary structure: http://espript.ibcp.fr . Roman Laskowski's program PDBSUM seems to fulfill a similar purpose. | Espript will produce nice Postscript plots from aligned sequences, highlighting secondary structure: http://espript.ibcp.fr . Roman Laskowski's program PDBSUM seems to fulfill a similar purpose. | ||
Pro-origami: http://munk.csse.unimelb.edu.au/pro-origami/ | Pro-origami: http://munk.csse.unimelb.edu.au/pro-origami/ - and see links on its website! | ||
TOPS: http://balabio.dcs.gla.ac.uk/tops/ | |||
CCP4's [http://www.ccp4.ac.uk/html/topdraw.html Topdraw] is a drawing tool to help you make your own topology drawing. | CCP4's [http://www.ccp4.ac.uk/html/topdraw.html Topdraw] is a drawing tool to help you make your own topology drawing. | ||
[https://www.ebi.ac.uk/thornton-srv/databases/pdbsum/Generate.html PDBsum Generate]: Upload your PDB file and it will output the 2D topology diagram. | |||
Latest revision as of 13:12, 9 April 2016
Espript will produce nice Postscript plots from aligned sequences, highlighting secondary structure: http://espript.ibcp.fr . Roman Laskowski's program PDBSUM seems to fulfill a similar purpose.
Pro-origami: http://munk.csse.unimelb.edu.au/pro-origami/ - and see links on its website!
TOPS: http://balabio.dcs.gla.ac.uk/tops/
CCP4's Topdraw is a drawing tool to help you make your own topology drawing.
PDBsum Generate: Upload your PDB file and it will output the 2D topology diagram.