Bioinformatics: Difference between revisions

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* [http://www.ebi.ac.uk/thornton-srv/databases/procognate/ database of cognate ligands for the domains of enzyme structures in CATH, SCOP and Pfam]
* [http://www.ebi.ac.uk/thornton-srv/databases/procognate/ database of cognate ligands for the domains of enzyme structures in CATH, SCOP and Pfam]
* [http://robetta.bakerlab.org/alascansubmit.jsp Rosetta Alanine Scanning] each residue in a interface is mutated to Ala; local minimisation is performed, and the binding energy is calculated
* [http://robetta.bakerlab.org/alascansubmit.jsp Rosetta Alanine Scanning] each residue in a interface is mutated to Ala; local minimisation is performed, and the binding energy is calculated
== Functional annotation ==
* [http://godot.bioinf.mpi-inf.mpg.de GOdot] webserver for predicting function from structure (see http://dx.plos.org/10.1371%2Fjournal.pcbi.1000105)
* [http://godot.bioinf.mpi-inf.mpg.de GOdot] webserver for predicting function from structure (see http://dx.plos.org/10.1371%2Fjournal.pcbi.1000105)
* [http://www.ebi.ac.uk/thornton-srv/databases/ProFunc/ ProFunc] Analysis of a protein's 3D structure to help identify its likely biochemical function
* [http://kb.psi-structuralgenomics.org/KB/index1.jsp?pageshow=39 Annotation] PSI Stuctural Genomics knowledgebase


=== Docking ===
=== Docking ===

Revision as of 10:59, 16 September 2009

Sequence only

Sequence to structure

Structure to Sequence

Structure only

Functional annotation

Docking

Other stuff