Model Evaluation: Difference between revisions

Revision as of 10:07, 7 March 2008

sfcheck - run CCP4Online sfcheck
CASTp - webserver for identification and measurements of surface accessible pockets as well as interior
DIMPLOT - Interactions between monomers of a dimer
FADE and PADRE - Shape and Complementarity Server
GRASP - Calculate electrostatic potential
LIGPLOT - Interactions around a ligand of piece of structure
NACCESS - Surface area calculaitons, per residue, or atom
NCONT - (ccp4) analyses contacts between subsets of atoms in a PDB file
Protein-Protein Interaction Server - stats on your chain interfaces and to obtain surface calculations
PARVATI - anisotropic displacement parameters statistics
SURFACE and AREAIMOL - (ccp4) -surface programs
VOIDOO - look for interior cavities
VADAR - (Volume, Area, Dihedral Angle Reporter)

STING Millenium - web-based suite of programs for visualizing molecular structure and comprehensive structure analysis:inaccessible cavities

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 * [http://www.biochem.ucl.ac.uk/bsm/PP/server/ Protein-Protein Interaction Server] - stats on your chain interfaces and  to obtain surface calculations
 * [http://skuld.bmsc.washington.edu/parvati/parvati.html PARVATI] - anisotropic displacement parameters statistics
-* [http://www.ccp4.ac.uk/newsletters/newsletter38/03_surfarea.html ] - SURFACE and AREAIMOL (ccp4) -surface programs
+* [http://www.ccp4.ac.uk/newsletters/newsletter38/03_surfarea.html SURFACE and AREAIMOL] -  (ccp4) -surface programs
 * [http://alpha2.bmc.uu.se/~gerard/manuals/gerard_manuals.html VOIDOO] - look for interior cavities
 * [http://redpoll.pharmacy.ualberta.ca/vadar/ VADAR ] - (Volume, Area, Dihedral Angle Reporter)