Storage of diffraction data: Difference between revisions
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Synchrotrons are very good at archiving all collected data. In contrast, there's no requirement for including diffraction data when submitting a structure to the PDB. Consequently, the connection between structure and the underlying data is lost for all practical purposes | Synchrotrons are very good at archiving all collected data. In contrast, there's no requirement for including diffraction data when submitting a structure to the PDB. Consequently, the connection between structure and the underlying data is lost for all practical purposes. | ||
== Diffraction data storage | == Diffraction data storage solutions (2018) == | ||
* zenodo.org (including https://zenodo.org/communities/mx/?page=1&size=20 but maybe other "communities"); this is managed by CERN | * zenodo.org (including https://zenodo.org/communities/mx/?page=1&size=20 but maybe other "communities"); this is managed by CERN | ||
* SBGrid https://data.sbgrid.org/ | * SBGrid https://data.sbgrid.org/ - see https://www.nature.com/articles/ncomms10882 | ||
* proteindiffraction.org (this has e.g. almost? all the JCSG data!) | * proteindiffraction.org (this has e.g. almost? all the JCSG data!) | ||
* Australian synchrotron.store - see https://store.synchrotron.org.au and http://scripts.iucr.org/cgi-bin/paper?S1399004714016174 | * Australian synchrotron.store - see https://store.synchrotron.org.au and http://scripts.iucr.org/cgi-bin/paper?S1399004714016174 | ||
* the ESRF makes all collected data available after 3 years; see http://www.esrf.eu/datapolicy | * the ESRF makes all collected data available after 3 years; see http://www.esrf.eu/datapolicy | ||
There are many more local repositories, e.g. for universities. | |||
Recent publications: http://journals.iucr.org/m/issues/2017/01/00/ti5008/index.html | |||
http://journals.iucr.org/m/issues/2017/01/00/hi0156/index.html | |||
Latest revision as of 22:42, 17 January 2018
Synchrotrons are very good at archiving all collected data. In contrast, there's no requirement for including diffraction data when submitting a structure to the PDB. Consequently, the connection between structure and the underlying data is lost for all practical purposes.
Diffraction data storage solutions (2018)
- zenodo.org (including https://zenodo.org/communities/mx/?page=1&size=20 but maybe other "communities"); this is managed by CERN
- SBGrid https://data.sbgrid.org/ - see https://www.nature.com/articles/ncomms10882
- proteindiffraction.org (this has e.g. almost? all the JCSG data!)
- Australian synchrotron.store - see https://store.synchrotron.org.au and http://scripts.iucr.org/cgi-bin/paper?S1399004714016174
- the ESRF makes all collected data available after 3 years; see http://www.esrf.eu/datapolicy
There are many more local repositories, e.g. for universities.
Recent publications: http://journals.iucr.org/m/issues/2017/01/00/ti5008/index.html http://journals.iucr.org/m/issues/2017/01/00/hi0156/index.html