Model Evaluation

CastP - Volume and surface calculation of pocket or cavity CASTp - webserver for identification and measurements of surface accessible pockets as well as interior DIMPLOT - Interactions between monomers of a dimer FADE and PADRE - Shape and Complementarity Server GRASP - Runs on Sundance (unix) only LIGPLOT - Interactions around a ligand of piece of structure NACCESS - Surface area calculaitons, per residue, or atom NCONT - (ccp4) analyses contacts between subsets of atoms in a PDB file Protein Interaction Server - to obtain surface calculations Protein-Protein Interaction Server - stats on your chain interfaces PARVATI anisotropic displacement parameters statistics SURFACE and AREAIMOL (ccp4) -surface programs VOIDOO - look for interior cavities, volumes of particular cavities (like active sites) VADAR (Volume, Area, Dihedral Angle Reporter)

STING Millenium - web-based suite of programs for visualizing molecular structure and comprehensive structure analysis:inaccessible cavities