Morph residues gui.py

Revision as of 17:34, 22 January 2014 by Bernhardcl (talk | contribs) (Created page with "if (have_coot_python): if coot_python.main_menubar(): menu = coot_menubar_menu("Morph") add_simple_coot_menu_menuitem( menu, "Morp...")
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if (have_coot_python):

   if coot_python.main_menubar():
       menu = coot_menubar_menu("Morph")
       add_simple_coot_menu_menuitem(
           menu,
           "Morph Fit This Molecule",
           lambda func:
           using_active_atom(morph_fit_all, "aa_imol", 10)
           )


       add_simple_coot_menu_menuitem(
           menu,
           "Morph Fit This Chain",
           lambda func:
           using_active_atom(morph_fit_chain, "aa_imol", "aa_chain_id", 10)
           )


       def morph_fit_region_func(select_radius, morph_radius):
           with UsingActiveAtom() as \
           [aa_imol, aa_chain_id, aa_res_no, aa_ins_code,
            aa_atom_name, aa_alt_conf]:
               central_residue = [aa_chain_id, aa_res_no, aa_ins_code]
               other_residues = residues_near_residue(aa_imol,
                                                      central_residue,
                                                      select_radius)
               morph_residues = [central_residue, other_residues]
               morph_fit_residues(aa_imol, morph_residues, morph_radius)
           
       add_simple_coot_menu_menuitem(
           menu,
           "Morph Fit This Region 12 9",
           lambda func:
           morph_fit_region_func(12, 9)
           )
       add_simple_coot_menu_menuitem(
           menu,
           "Morph Fit This Region 8 6",
           lambda func:
           morph_fit_region_func(8, 6)
           )
       add_simple_coot_menu_menuitem(
           menu,
           "Jiggle-fit This Molecule",
           lambda func:
           using_active_atom(fit_molecule_to_map_by_random_jiggle,
                             "aa_imol", 1000, 2)
           )