Custom building Coot from source code: Difference between revisions

Custom building Coot from source code (edit)

Revision as of 20:29, 15 November 2008

1,501 bytes added , 15 November 2008

revising section →‎First, [[Install CCP4 on Linux]].

Wgscott

126

edits

@@ Line 1: / Line 1: @@
 This is an advanced task. Don't attempt it unless you are a Unix expert. The normal method installing Coot is to download a binary, or to use the autobuild scripts: [[Coot]].
-====First, [[Install CCP4 on Linux]].====
+====First, [[Install gpp4 and other dependencies on Linux]].====
-I let ccp4 build its own fftw. Be sure to build the clipper libraries.  After you complete the default installation, go back to $CLIB/clipper/clipper/mmdbold and build some more libraries, i.e.,
+Instead of using ccp4-onlylibs-dev, we want to use ssm, mmdb, gpp4 and clipper packages.
-  cd  $CLIB/clipper/clipper/mmdbold
+To keep things tidy, I suggest installing everything into /usr/local/xtal
+Install these in the order described:
+=====mmdb=====
+ wget http://www.ebi.ac.uk/~keb/cldoc/downloads/mmdb-1.19.tar.gz
+ ./configure --prefix=/usr/local/xtal --includedir=/usr/local/xtal/include
+ make
+ make install
+=====ssm=====
+ wget ftp://ftp.bioxray.au.dk/pub/mok/src/ssm-0.1.tar.gz
+ CPPFLAGS=-I/usr/local/xtal/include ./configure --prefix=/usr/local/xtal --includedir=/usr/local/xtal/include
+ make
+ make install
+=====gpp4=====
+ wget ftp://ftp.bioxray.au.dk/pub/mok/src/gpp4-1.0.4.tar.gz
+ CPPFLAGS=-I/usr/local/xtal/include ./configure --prefix=/usr/local/xtal --includedir=/usr/local/xtal/include
+  make
+  make install
+=====fftw=====
+We need to compile fftw in a way that differs from that used to make the standard linux distribution of fftw. So to do that, we will install our own in /usr/local/xtal/lib, so it will remain hidden from the rest of the system, unless directed to look for it there.
+ ftp://ftp.fftw.org/pub/fftw/old/fftw-2.1.5.tar.gz
+ CPPFLAGS=-I/usr/local/xtal/include ./configure --prefix=/usr/local/xtal --includedir=/usr/local/xtal/include --enable-float
+ make
+ make install
+=====clipper=====
+ wget http://www.ysbl.york.ac.uk/~cowtan/clipper/clipper20ac.latest.tar.gz
+ CPPFLAGS=-I/usr/local/xtal/include ./configure --prefix=/usr/local/xtal --includedir=/usr/local/xtal/include -enable-shared --with-gpp4=/usr/local/xtal --with-mmdb=/usr/local/xtal --with-fftw=/usr/local/xtal --enable-mmdb --enable-minimol --enable-cif --enable-cns --enable-gpp4
   make
   make install
-to get the additional mmdbold libraries installed in their canonical location.  This should take care of the ccp4-type dependencies, as well as ensuring that you have fftw libs that play well with the clipper libraries.
+=====guile-lib=====
+Yet another little guile fragment that is not distributed (well actually there is a very old one that works with guile1.4 — we need this for guile1.8)
+ wget http://download.gna.org/guile-lib/guile-lib-0.1.6.tar.gz./configure --prefix=/usr
+ make
+ make install
 ====Second, install a newer version of Clipper====