Custom building Coot from source code: Difference between revisions

Custom building Coot from source code (edit)

Revision as of 20:39, 15 November 2008

516 bytes added , 15 November 2008

→‎Fourth, configure and build coot like this:

Wgscott

126

edits

@@ Line 72: / Line 72: @@
 ====Fourth, configure and build coot like this:====
-Use sudo zsh (or whatever shell) to open a root shell, and issue the commands
+If root is enabled, log into a root shell, or else if you have sudo (debian, ubuntu, etc), use the command
+ sudo zsh
+(or whatever shell) to open a root shell, and issue the following commands as indicated.
+First, issue the following command to fix a configure bug when compiling with gpp4:
+ perl -pi -e 's|lccp4c|lgpp4|g' configure
+Now configure this way:
+PATH="/usr/local/xtal/bin:$PATH" \
+CPPFLAGS="-I/usr/local/xtal/include -I/usr/local/xtal/include/clipper -I/usr/local/xtal/include/gpp4 -I/usr/local/xtal/include/mmdb -I/usr/local/xtal/include/ssm" \
+./configure --prefix=$PWD \
+--with-gpp4=/usr/local/xtal \
+--with-mmdb-prefix=/usr/local/xtal \
+--with-ssmlib-prefix=/usr/local/xtal \
+--with-clipper-prefix=/usr/local/xtal \
+--with-fftw=/usr/local/xtal \
+--with-glut-prefix=/usr --with-gl-prefix=/usr/X11R6 \
+--with-gtk2 --with-gnomecanvas-prefix=/usr \
+--with-imlib-prefix=/usr --with-gtkgl-prefix=/usr \
+--with-glib-prefix=/usr --with-guile-gtk \
+--with-guile-gtk-prefix=/usr --with-gsl-prefix=/usr \
+--with-guile --with-python
+Then, remake the  src/coot_wrap_python.cc and src/coot_wrap_guile.cc files:
- CPPFLAGS="-I$CLIB/src -I$CLIB/src/mmdb" ./configure --with-mmdb-prefix=$CCP4 --with-clipper-prefix=/usr/local/xtal \
- --with-fftw=$CCP4 --with-glut-prefix=/usr --with-gl-prefix=/usr/X11R6 --with-gtk2 --with-gnomecanvas-prefix=/usr \
- --with-ssmlib-prefix=$CCP4 --with-imlib-prefix=/usr --with-gtkgl-prefix=/usr --with-glib-prefix=/usr --with-guile-gtk \
- --with-guile-gtk-prefix=/usr   --with-gsl-prefix=/usr --with-guile --with-python --prefix=$PWD
-Remake the  src/coot_wrap_python.cc and src/coot_wrap_guile.cc files
   /bin/rm -f **/coot_wrap_**.cc
   cd src
@@ Line 89: / Line 110: @@
   cd ..
-Now compile it:
+Now compile coot:
   make
   make -i install
@@ Line 100: / Line 121: @@
   tar xvfz coot-reference-structures.tar.gz ; rm coot-reference-structures.tar.gz
-Now add the refmac dictionaries (eg using coot-0.4.1 and refmac 5.4; change as required):
+Now add the refmac dictionaries (eg using coot-0.5 and refmac 5.4; change as required):
   cd /tmp
   wget  wget http://www.ysbl.york.ac.uk/refmac/data/refmac5.4_dictionary.tar.gz
   tar xvfz refmac5.4_dictionary.tar.gz
-  mkdir -p  /usr/local/xtal/coot-0.4.1/lib/data
+  mkdir -p  /usr/local/xtal/coot-0.5/lib/data
-  cp -r dic /usr/local/xtal/coot-0.4.1/lib/data/monomers
+  cp -r dic /usr/local/xtal/coot-0.5/lib/data/monomers
 Export the COOT_REFMAC_LIB_DIR variable (you can edit bin/coot):