Phenix: Difference between revisions

201 bytes added ,  22 September 2010
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=== phenix.phaser ===
=== phenix.phaser ===


Not officially documented. It is run by the Phaser-MR GUI which supports the fine-tuning of parameters.
Officially documented in the [http://www.phaser.cimr.cam.ac.uk/index.php/Phaser_Crystallographic_Software phaserwiki]. It can be run from the commandline (and can serve as a replacement for the CCP4 phaser which is an older version!) and by the Phaser-MR GUI which supports the fine-tuning of parameters.


If you run this:
If you run this:
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  phenix.phaser params.eff
  phenix.phaser params.eff


it will use the Phenix-style configuration file, but if you just run
it will use the Phenix-style configuration file, but if you just run "phenix.phaser" with no arguments (or a shell redirect from a file), it will use the CCP4-style keyword input.
"phenix.phaser" with no arguments (or a shell redirect from a file),
it will use the CCP4-style keyword input.


This is an [[params.eff|example]] of params.eff.
This is an [[params.eff|example]] of params.eff.
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