Bernhards key bindings for coot.py: Difference between revisions

Bernhards key bindings for coot.py (edit)

Revision as of 14:01, 5 June 2011

88 bytes added , 5 June 2011

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Bernhardcl

28

edits

@@ Line 37: / Line 37: @@
          fill_partial_residue(imol, chain_id, res_no, ins_code)
 add_key_binding("Fill Partial", "k", lambda: key_binding_func_2())
+add_key_binding("Kill Sidechain", "K", lambda:
+                using_active_atom(delete_residue_sidechain,
+                                  "aa_imol", "aa_chain_id", "aa_res_no", "aa_ins_code", 0))
+refine_residue_sphere_radius = 3.5  # Angstroms
+add_key_binding("Refine residue in a sphere", "R",
+                lambda: sphere_refine(refine_residue_sphere_radius))
 def key_binding_func_3():
@@ Line 88: / Line 96: @@
 def key_binding_func_6():
-    from types import ListType
      active_atom = active_residue()
      if (not active_atom):
@@ Line 99: / Line 106: @@
          atom_name = active_atom[4]
          alt_conf  = active_atom[5]
-         centred_residue = active_atom[1:4]
+         regularize_zone(imol, chain_id,
-        other_residues = residues_near_residue(imol, centred_residue, 3)
+                        res_no - 1, res_no + 1,
-        all_residues = [centred_residue]
+                        alt_conf)
-        if (type(other_residues) is ListType):
+add_key_binding("Regularize Residues", "B", lambda: key_binding_func_6())
-            all_residues += other_residues
-        print "imol: %s residues: %s" %(imol, all_residues)
-        refine_residues(imol, all_residues)
-add_key_binding("Refine residues in a sphere", "R", lambda: key_binding_func_6())
 def key_binding_func_7():