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Phenix: Difference between revisions
→phenix.grow_density - local density improvement
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As originally described in Acta Cryst. (1997). D53, 540-543 (in development). There is a [http://cci.lbl.gov/~afonine/tmp/grow_density.pdf PDF] file (or [http://phenix-online.org/pipermail/phenixbb/attachments/20110811/a73f1428/attachment.htm]) to explain some parameters of phenix.grow_density. It is very sketchy and may not be 100% up-to-date. | As originally described in Acta Cryst. (1997). D53, 540-543 (in development). There is a [http://cci.lbl.gov/~afonine/tmp/grow_density.pdf PDF] file (or [http://phenix-online.org/pipermail/phenixbb/attachments/20110811/a73f1428/attachment.htm]) to explain some parameters of phenix.grow_density. It is very sketchy and may not be 100% up-to-date. | ||
Defining several spheres where the DA are going to be placed is better than defining one large sphere, although it depends on the | Defining several spheres where the DA (dummy atoms) are going to be placed is better than defining one large sphere, although it depends on the | ||
region size and shape. For example: | region size and shape. For example: | ||
sphere { | sphere { | ||