1,330
edits
Coot: Difference between revisions
building loops
(building loops) |
|||
| Line 509: | Line 509: | ||
A: The other language is a form of Lisp, called [http://en.wikipedia.org/wiki/Scheme_(programming_language) Scheme]. You can learn about programming python in many ways of course (not least the [http://docs.python.org/tutorial/ python tutorial], which is what I read first). The coot python extensions are described in the documentation. There is a standard trivial formatting change that has to be made to get the syntax right for python, see "Python Scripting" [[http://www.ysbl.york.ac.uk/~lohkamp/coot/wincoot-faq.html|here]]. There is a growing collection of coot scripts in this Wiki article. | A: The other language is a form of Lisp, called [http://en.wikipedia.org/wiki/Scheme_(programming_language) Scheme]. You can learn about programming python in many ways of course (not least the [http://docs.python.org/tutorial/ python tutorial], which is what I read first). The coot python extensions are described in the documentation. There is a standard trivial formatting change that has to be made to get the syntax right for python, see "Python Scripting" [[http://www.ysbl.york.ac.uk/~lohkamp/coot/wincoot-faq.html|here]]. There is a growing collection of coot scripts in this Wiki article. | ||
== building loops == | |||
Q: Is there any similar function in COOT as lego_auto_mainchain command in O program? | |||
A: there are 2 loop fitting tools in Coot | |||
# C alpha -> Mainchain [http://lmb.bioch.ox.ac.uk/coot/doc/coot.html#C_002dalpha-_002d_003e-Mainchain],[http://lmb.bioch.ox.ac.uk/coot/doc/coot.html#Building-Links-and-Loops] | |||
# DB Loop: (No good documentation) [http://lmb.bioch.ox.ac.uk/coot/doc/coot/protein_002ddb_002dloops.html#protein_002ddb_002dloops] Extensions -> Modelling -> DB Loop... | |||
==LSQ superpositions== | ==LSQ superpositions== | ||