Bioinformatics: Difference between revisions
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* [[Programs for nucleic acid structure analysis|Programs for nucleic acid structure analysis]] | * [[Programs for nucleic acid structure analysis|Programs for nucleic acid structure analysis]] | ||
* [[Morphing]] | * [[Morphing]] | ||
* [[Programs for representing the surface of a channel inside protein]] | |||
=== Docking === | === Docking === | ||
Revision as of 05:57, 29 August 2008
Sequence only
Sequence to structure
Structure to Sequence
Structure only
- Servers for ligand topologies/parameters
- Servers and programs for protein structure analysis
- Programs for nucleic acid structure analysis
- Morphing
- Programs for representing the surface of a channel inside protein
Docking
- ClusPro - easy to use web interface
- Rosetta can do much more than just docking, but is difficult to use
- 3D-dock - uses an algorithm that mainly looks at surface complimentarity between the two proteins
- Dave Ritchie's Hex program - it is blisteringly quick
- Haddock - recommended by Tassos
- AutoDock - Wiki at https://www.nbcr.net/pub/wiki/index.php?title=AutoDock
Other stuff
- Programs for visualization (see also Model building)