Bioinformatics: Difference between revisions
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* [http://www.rosettacommons.org/ Rosetta] can do much more than just docking, but is difficult to use | * [http://www.rosettacommons.org/ Rosetta] can do much more than just docking, but is difficult to use | ||
* [http://www.sbg.bio.ic.ac.uk/docking/ 3D-dock] - uses an algorithm that mainly looks at surface complimentarity between the two proteins | * [http://www.sbg.bio.ic.ac.uk/docking/ 3D-dock] - uses an algorithm that mainly looks at surface complimentarity between the two proteins | ||
* Dave Ritchie's Hex program - it is blisteringly quick | * [http://www.csd.abdn.ac.uk/~dritchie/ Dave Ritchie's Hex program] - it is blisteringly quick | ||
* [http://www.nmr.chem.uu.nl/haddock/ Haddock] | |||
== Other stuff == | == Other stuff == | ||
Revision as of 19:37, 6 May 2008
Sequence only
Sequence to structure
Structure to Sequence
Structure only
- Servers for ligand topologies/parameters
- Servers and programs for protein structure analysis
- Programs for nucleic acid structure analysis
- Morphing
Docking
- ClusPro - easy to use web interface
- Rosetta can do much more than just docking, but is difficult to use
- 3D-dock - uses an algorithm that mainly looks at surface complimentarity between the two proteins
- Dave Ritchie's Hex program - it is blisteringly quick
- Haddock
Other stuff
- Programs for visualization (see also Model building)