Coot: Difference between revisions

975 bytes added ,  8 December 2008
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  include "/usr/share/themes/Glossy_P/gtk-2.0/gtkrc"
  include "/usr/share/themes/Glossy_P/gtk-2.0/gtkrc"
=Assorted questions and answers (from the mailinglist)=
Q:
I am sure this exists somewhere through scripting in COOT, but can I apply NCS edits to only a subset of NCS copies? In  other words, can I tell coot which are NCS related chains, and which aren't.  I am working on this nightmarish case of asymmetrical homodimers, where the sequences are very similar, but the structures are not, so I need to tell coot which chains are actually related to each other.
A: Nightmare. If you have a recent [1632 or later for the scheme version, 1646 for the python version] Coot, you can do this:
(manual-ncs-ghosts imol resno-start resno-end chain-id-list)
where
* imol is 0 (say)
* resno-start and resno-end is the residue range for the LSQ fitting to return the NCS matrix,
* chain-id-list is the list of chain-ids, starting with the master/reference chain-id and followed by the peer chain-ids that are NCS related, e.g. (list "A" "B" "D")
The python interface is similar.
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