Coot: Difference between revisions

Coot (edit)

Revision as of 13:09, 15 May 2021

1,304 bytes removed , 15 May 2021

m

blog link

Kay

Bureaucrats

1,328

edits

@@ Line 2: / Line 2: @@
 Coot is a graphics program for building, refining and analysing macromolecular models obtained with crystallographic procedures.
-There is a [http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/ homepage] with extensive [http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/web/docs/ documentation]. The program may be downloaded for Linux and Windows computers from the [http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/binaries/pre-release/ primary server]. The license of Coot is GNU GPL.
+There is a [http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/ homepage] with extensive [http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/web/docs/ documentation]. There's also Paul Emsley's [https://pemsley.github.io/coot/ coot blog].
+The program may be downloaded for Linux and Windows computers from the [http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/binaries/pre-release/ primary server]. The license of Coot is GNU GPL.
 =Installing Coot=
@@ Line 12: / Line 13: @@
 ==Installing Coot on Windows==
-Please refer to [https://github.com/bernhardcl/coot/releases Bernhard Lohkamp's WinCoot download] page.
+Please refer to [http://bernhardcl.github.io/coot/ Bernhard Lohkamp's WinCoot download] page.
 ==Installing Coot on Linux==
@@ Line 19: / Line 20: @@
 === Installation from a distributed binary tarball package ===
-This is the recommended way for those who do not want to delve into the mysteries of compiling and linking a great but complex piece of software. Read the (somewhat outdated, it seems) [http://www.ysbl.york.ac.uk/%7Eemsley/coot/coot-faq.html Coot FAQ] to find "Additional Notes" for your operating system.
+This is the recommended way for those who do not want to delve into the mysteries of compiling and linking a great but complex piece of software. Read the [https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ Coot documentation] to find out about the details.
 In short, just go to https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/binaries/release/ and pick a suitable binary, e.g.
@@ Line 78: / Line 79: @@
 === Installation from source code via autobuild scripts ===
-Installation of coot and all of its dependencies are handled automatically through the autobuild scripts. There are two versions:
+Go to https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/build-install-coot-from-scratch.html
-* [http://www.ysbl.york.ac.uk/~emsley/build-logs/build-it GTK1] - the old user interface. This script builds coot and all its dependencies.
-* [http://www.ysbl.york.ac.uk/~emsley/build-logs/build-it-gtk2-simple GTK2] - the new user interface. This script builds coot and most of the dependencies, excluding GTK2.
-To build Coot, all you should need to do is edit a few settings in the top of the build script, or alternatively specify those settings as environment variables. For example, the following sequence of instructions will build the latest pre-release of the GTK 2 version with python support:
- wget http://www.ysbl.york.ac.uk/~emsley/build-logs/build-it-gtk2-simple
- export AUTOBUILD_INSTALLED=${HOME}/autobuild/coot
- export AUTOBUILD_BUILD=${HOME}/autobuild/
- export LOGS=$AUTOBUILD_BUILD/logs
- export NIGHTLY_DEST_DIR=$AUTOBUILD_BUILD
- export STABLE_DEST_DIR=$AUTOBUILD_BUILD
- export build_coot_prerelease=1
- bash build-it-gtk2-simple python > build.log
-(This script works in bash. For tcsh, replace 'export' with 'setenv' and '=' with ' '.
-In some cases you may need to download additional development packages in order to build all the components.
-=== Installation from source code manually ===
-There are also instructions for [[Custom building Coot from source code]].
 =Running Coot=

Coot: Difference between revisions

Coot (edit)

Revision as of 13:09, 15 May 2021

Navigation menu

Search