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→Installing Coot on Windows
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Coot is a graphics program for building, refining and analysing macromolecular models obtained with crystallographic procedures. | Coot is a graphics program for building, refining and analysing macromolecular models obtained with crystallographic procedures. | ||
There is a [http://www2.mrc-lmb.cam.ac.uk/ | There is a [http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ homepage] with extensive [http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/web/docs/ documentation]. The program may there be [http://www2.mrc-lmb.cam.ac.uk/Personal/pemsley/coot/binaries/release downloaded] for Linux and Windows. There's also Paul Emsley's [https://pemsley.github.io/coot/ coot blog]. The license of Coot is GNU GPL. | ||
=Installing Coot= | =Installing Coot= | ||
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==Installing Coot on Windows== | ==Installing Coot on Windows== | ||
Please refer to [ | Please refer to [http://bernhardcl.github.io/coot/ Bernhard Lohkamp's WinCoot download] page. Or check manually on | ||
[https://github.com/bernhardcl/coot/releases GitHub]. | |||
==Installing Coot on Linux== | ==Installing Coot on Linux== | ||
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run_scheme_command("(scheme-command arg1 arg2 ...)") [from python] | run_scheme_command("(scheme-command arg1 arg2 ...)") [from python] | ||
=Assorted questions and answers (from the mailinglist)= | =Assorted questions and answers (from the mailinglist)= | ||
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Q: Is it possible to deactivate the nomenclature errors check? Sometimes this check is not very useful and it becomes rather annoying when one has several molecules loaded only wants to look at the structures... | Q: Is it possible to deactivate the nomenclature errors check? Sometimes this check is not very useful and it becomes rather annoying when one has several molecules loaded only wants to look at the structures... | ||
A: The [https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/docs/coot.html#set_002dnomenclature_002derrors_002don_002dread Coot manual] should help: Add to your ~/.coot | A: The [https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/web/docs/coot.html#set_002dnomenclature_002derrors_002don_002dread Coot manual] should help: Add to your startup script ~/.coot : | ||
(set-nomenclature-errors-on-read "ignore") | (set-nomenclature-errors-on-read "ignore") | ||
In case you are using the python file, | In case you are using the python file ~/.coot.py , use | ||
set_nomenclature_errors_on_read("ignore") | |||
On Windows, this line should go into X:\YourWinCootDirectory\.coot-preferences\coot.py . | |||
Alternatively put ".coot.py" in X:\YourWinCootDirectory. | |||
==NCS edits== | ==NCS edits== | ||
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set_show_intermediate_atoms_rama_markup(1) | set_show_intermediate_atoms_rama_markup(1) | ||
set_do_coot_probe_dots_during_refine(1) | set_do_coot_probe_dots_during_refine(1) | ||
=See also= | |||
[https://www.youtube.com/watch?v=Xhonm4K1y0c This video] is one of what will be a series of videos showcasing Coot 1 - and this one starts at the beginning. | |||