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Custom building Coot from source code: Difference between revisions
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Custom building Coot from source code (edit)
Revision as of 23:48, 27 February 2011
, 27 February 2011Undo revision 1930 by Mok (talk)
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The following is specific to Ubuntu linux, but should be generalizable to any recent linux distribution. | The following is specific to Ubuntu linux, but should be generalizable to any recent linux distribution. | ||
This is a so-called "advanced" task. Don't attempt it unless you would rather compile your own software than use pre-compiled versions. The standard (supported) method for installing Coot is to download a pre-compiled binary, or to use the autobuild scripts | '''This is a so-called "advanced" task. Don't attempt it unless you would rather compile your own software than use pre-compiled versions. The standard (supported) method for installing Coot is to [[Coot#Installation_from_a_distributed_binary_tarball_package |download a pre-compiled binary]], or to use [[Coot#Installation_from_source_code_via_autobuild_scripts |the autobuild scripts]].''' | ||
==Debian packages for Coot and its Dependencies== | ==Installing pre-compiled Coot binaries== | ||
===Avoiding manual installation=== | |||
This page describes full manual installation, for those who want (or need) to do it. It is not necessary on most systems. For autobuild and for installation of precompiled Coot binaries, see [[Coot#Installing_Coot | Installing Coot]] | |||
===Debian packages for Coot and its Dependencies=== | |||
Please be aware that everything compiled below has been archived as [[Coot#Instalation_on_Debian.2FUbuntu_from_debian_archive_files | Debian archive files]] that you can easily install. | Please be aware that everything compiled below has been archived as [[Coot#Instalation_on_Debian.2FUbuntu_from_debian_archive_files | Debian archive files]] that you can easily install. | ||
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===gpp4=== | ===gpp4=== | ||
wget | wget http://launchpad.net/gpp4/1.3/1.3.1/+download/gpp4-1.3.1.tar.gz | ||
CPPFLAGS=-I/usr/local/xtal/include ./configure --prefix=/usr/local/xtal --includedir=/usr/local/xtal/include | CPPFLAGS=-I/usr/local/xtal/include ./configure --prefix=/usr/local/xtal --includedir=/usr/local/xtal/include | ||
make | make | ||
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===To make it play nice with python, I have had to do the following: === | ===To make it play nice with python, I have had to do the following: === | ||
perl pi -e 's|PYTHONHOME=\$COOT_PREFIX|\#PYTHONHOME=\$COOT_PREFIX|g' bin/coot | perl -pi -e 's|PYTHONHOME=\$COOT_PREFIX|\#PYTHONHOME=\$COOT_PREFIX|g' bin/coot | ||
cp src/coot.py python/. | cp src/coot.py python/. | ||
cp src/coot.py share/coot/python/. | cp src/coot.py share/coot/python/. | ||
===Now add the reference structures: === | ===Now add the reference structures: === | ||
cd share/coot | cd share/coot | ||
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cd /tmp | cd /tmp | ||
wget http://www.ysbl.york.ac.uk/refmac/data/refmac_dictionary.tar.gz | |||
tar xvfz | tar xvfz refmac_dictionary.tar.gz | ||
mkdir -p /usr/local/xtal/coot-0.5/lib/data | mkdir -p /usr/local/xtal/coot-0.5.2/lib/data | ||
cp -r dic /usr/local/xtal/coot-0.5/lib/data/monomers | cp -r dic /usr/local/xtal/coot-0.5.2/lib/data/monomers | ||
===Export the COOT_REFMAC_LIB_DIR variable === | ===Export the COOT_REFMAC_LIB_DIR variable === | ||