Model Evaluation: Difference between revisions
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* [http://alpha2.bmc.uu.se/~gerard/manuals/gerard_manuals.html VOIDOO] - look for interior cavities | * [http://alpha2.bmc.uu.se/~gerard/manuals/gerard_manuals.html VOIDOO] - look for interior cavities | ||
* [http://redpoll.pharmacy.ualberta.ca/vadar/ VADAR ] - (Volume, Area, Dihedral Angle Reporter) | * [http://redpoll.pharmacy.ualberta.ca/vadar/ VADAR ] - (Volume, Area, Dihedral Angle Reporter) | ||
Revision as of 11:08, 7 March 2008
- sfcheck - run CCP4Online sfcheck
- CASTp - webserver for identification and measurements of surface accessible pockets as well as interior
- DIMPLOT - Interactions between monomers of a dimer
- FADE and PADRE - Shape and Complementarity Server
- GRASP - Calculate electrostatic potential
- LIGPLOT - Interactions around a ligand of piece of structure
- NACCESS - Surface area calculaitons, per residue, or atom
- NCONT - (ccp4) analyses contacts between subsets of atoms in a PDB file
- Protein-Protein Interaction Server - stats on your chain interfaces and to obtain surface calculations
- PARVATI - anisotropic displacement parameters statistics
- SURFACE and AREAIMOL - (ccp4) -surface programs
- VOIDOO - look for interior cavities
- VADAR - (Volume, Area, Dihedral Angle Reporter)