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Pauls-key-bindings-for-coot: Difference between revisions
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(New page: <pre> (add-key-binding "Refine Active Residue" "r" (lambda () (manual-refine-residues 0))) (add-key-binding "Refine Active Residue AA" "x" (lambda () (refine-active-residue))) (add-key-bi...) |
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(add-key-binding "Refine Active Residue AA" "x" (lambda () (refine-active-residue))) | (add-key-binding "Refine Active Residue AA" "x" (lambda () (refine-active-residue))) | ||
(add-key-binding "Triple Refine" "t" (lambda () (manual-refine-residues 1))) | (add-key-binding "Triple Refine" "t" (lambda () (manual-refine-residues 1))) | ||
(add-key-binding "Autofit Rotamer" "j" (lambda () (auto-fit-rotamer-active-residue))) | (add-key-binding "Autofit Rotamer" "j" (lambda () (auto-fit-rotamer-active-residue))) | ||
(add-key-binding "Pepflip" "q" (lambda () (pepflip-active-residue))) | (add-key-binding "Pepflip" "q" (lambda () (pepflip-active-residue))) | ||
| Line 32: | Line 31: | ||
(alt-conf (list-ref active-atom 5))) | (alt-conf (list-ref active-atom 5))) | ||
(fill-partial-residue imol chain-id res-no ins-code)))))) | (fill-partial-residue imol chain-id res-no ins-code)))))) | ||
(add-key-binding "Kill Sidechain" "K" | |||
(lambda () | |||
(using-active-atom | |||
(delete-residue-sidechain aa-imol aa-chain-id aa-res-no aa-ins-code 0)))) | |||
(define *refine-residue-sphere-radius* 3.5) ;; Angstroms | |||
(add-key-binding "Refine residues in a sphere" "R" | |||
(lambda () | |||
(let ((active-atom (active-residue))) | |||
(if (not (list? active-atom)) | |||
(format #t "No active atom~%") | |||
(let* ((centred-residue (list-head (cdr active-atom) 3)) | |||
(imol (car active-atom)) | |||
(other-residues (residues-near-residue imol centred-residue *refine-residue-sphere-radius*)) | |||
(all-residues (if (list? other-residues) | |||
(cons centred-residue other-residues) | |||
(list centred-residue)))) | |||
(refine-residues imol all-residues)))))) | |||
(add-key-binding "Neighbours Refine" "h" | |||
(lambda () | |||
(if (not (valid-map-molecule? (imol-refinement-map))) | |||
(info-dialog "Must set the refinement map")) | |||
(using-active-atom | |||
(let* ((rc-spec (list aa-chain-id aa-res-no aa-ins-code)) | |||
(ls (residues-near-residue aa-imol rc-spec 1.9))) | |||
(with-auto-accept | |||
(refine-residues aa-imol (cons rc-spec ls))))))) | |||
(add-key-binding "Load RNAs files" "F9" | (add-key-binding "Load RNAs files" "F9" | ||
(lambda () | (lambda () | ||
| Line 56: | Line 88: | ||
(set-draw-ncs-ghosts keyboard-ghosts-mol 1) | (set-draw-ncs-ghosts keyboard-ghosts-mol 1) | ||
(set-draw-ncs-ghosts keyboard-ghosts-mol 0))))) | (set-draw-ncs-ghosts keyboard-ghosts-mol 0))))) | ||
(add-key-binding "Hydrogens off" " | |||
(add-key-binding "Hydrogens off" "[" | |||
(lambda () | (lambda () | ||
(set-draw-hydrogens 0 | (let ((imol | ||
(add-key-binding "Hydrogens on" " | (let ((active-atom (active-residue))) | ||
(if active-atom | |||
(car active-atom) | |||
0)))) | |||
(set-draw-hydrogens imol 0)))) | |||
(add-key-binding "Hydrogens on" "]" | |||
(lambda () | (lambda () | ||
(set-draw-hydrogens 0 1))) | (let ((imol | ||
(let ((active-atom (active-residue))) | |||
(if active-atom | |||
(car active-atom) | |||
0)))) | |||
(set-draw-hydrogens imol 1)))) | |||
(add-key-binding "Rotamer name in Status Bar" "~" | |||
(lambda () | |||
(let ((active-atom (active-residue))) | |||
(if (not active-residue) | |||
(add-status-bar-text "No residue found") | |||
(let ((imol (list-ref active-atom 0)) | |||
(chain-id (list-ref active-atom 1)) | |||
(res-no (list-ref active-atom 2)) | |||
(ins-code (list-ref active-atom 3)) | |||
(atom-name (list-ref active-atom 4)) | |||
(alt-conf (list-ref active-atom 5))) | |||
(let ((name (get-rotamer-name imol chain-id res-no ins-code))) | |||
(if (not name) | |||
(add-status-bar-text "No name found") | |||
(if (string=? "" name) | |||
(add-status-bar-text "No name for this") | |||
(add-status-bar-text (string-append "Rotamer name: " name)))))))))) | |||
(add-key-binding "Regularize Residues" "B" | |||
(lambda () | |||
(using-active-atom | |||
(regularize-zone aa-imol aa-chain-id (- aa-res-no 1) (+ aa-res-no 1) aa-alt-conf)))) | |||
(add-key-binding "Add Terminal Residue" "bar" | |||
(lambda () | |||
(let ((active-atom (active-residue))) | |||
(if (not active-atom) | |||
(format #t "No active atom~%") | |||
(let ((imol (list-ref active-atom 0)) | |||
(chain-id (list-ref active-atom 1)) | |||
(res-no (list-ref active-atom 2)) | |||
(ins-code (list-ref active-atom 3)) | |||
(atom-name (list-ref active-atom 4)) | |||
(alt-conf (list-ref active-atom 5))) | |||
(add-terminal-residue imol chain-id res-no "auto" 1)))))) | |||
(add-key-binding "Accept Baton Position" "quoteleft" accept-baton-position) | |||
</pre> | </pre> | ||