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Phenix: Difference between revisions
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PHENIX (Python-based Hierarchical ENvironment for Integrated Xtallography) is a new software suite for the automated determination and refinement of macromolecular structures using X-ray crystallography and other methods. It integrates well with CCP4-formatted files for I/O, is highly automated, and very straightforward to use. | PHENIX (Python-based Hierarchical ENvironment for Integrated Xtallography) is a new software suite for the automated determination and refinement of macromolecular structures using X-ray crystallography and other methods. It integrates well with CCP4-formatted files for I/O, is highly automated, and very straightforward to use. | ||
The suite (documentation | The suite (documentation [http://www.phenix-online.org/ at Phenix home page]; [http://www.phenix-online.org/documentation/nightlies/ for nightly builds]) has a GUI program (phenix) which can be used to run the programs, but they also work from the command line: | ||
* [http://www.phenix-online.org/documentation/refinement.htm phenix.refine] - refinement program | * [http://www.phenix-online.org/documentation/refinement.htm phenix.refine] - refinement program | ||
* [http://www.phenix-online.org/documentation/xtriage.htm phenix.xtriage] - assessing data quality | * [http://www.phenix-online.org/documentation/xtriage.htm phenix.xtriage] - assessing data quality | ||