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== Experimental phasing == | == Experimental phasing == | ||
=== [http://www.phenix-online.org/documentation/autosol.htm phenix.autosol] - experimental phasing "wizard" === | |||
phenix.autosol uses HYSS, SOLVE, Phaser, RESOLVE, xtriage and phenix.refine to solve a structure and generate experimental phases with the MAD, MIR, SIR, or SAD methods | |||
== Molecular replacement == | == Molecular replacement == | ||
=== | === [http://www.phenix-online.org/documentation/automr.htm phenix.automr] - interface to Phaser and Resolve === | ||
This "wizard" provides an interface to Phaser molecular replacement and feeds the results of molecular replacement directly into the AutoBuild Wizard for automated model rebuilding | |||
=== [http://www.phenix-online.org/documentation/sculptor.htm phenix.sculptor] - automate selection and editing of molecular replacement (MR) models === | |||
=== [http://www.phenix-online.org/documentation/ensembler.htm phenix.ensembler] - multiple superposition tool to automate construction of ensembles for MR === | |||
== Ligands == | == Ligands == | ||
=== [http://www.phenix-online.org/documentation/reel.htm phenix.reel] - restraints editor especially for ligands === | |||
=== [http://www.phenix-online.org/documentation/elbow.htm phenix.elbow] - electronic Ligand Builder and Optimisation Workbench === | |||
== Model building and completion == | == Model building and completion == | ||
=== [http://www.phenix-online.org/documentation/autobuild.htm phenix.autobuild] - "wizard" for model rebuilding and completion === | |||
phenix.phase_and_build, phenix.build_one_model are fast ways to obtain results. | |||
=== [http://www.phenix-online.org/documentation/ligandfit.htm phenix.ligandfit] - "wizard" carrying out fitting of flexible ligands to electron density maps === | |||
=== phenix.phase_and_build and phenix.build_one_model - fast autobuild === | |||
=== [http://www.phenix-online.org/documentation/find_helices.htm phenix.find_helices] - rapid helix fitting to a map === | |||
=== phenix.fit_loops - fill short gaps using a loop library, and longer gaps (up to 15 residues) iteratively === | |||
=== [http://www.phenix-online.org/documentation/assign_sequence.htm phenix.assign_sequence] - sequence assignment and linkage of neighboring segments === | |||
=== phenix.ligand_identification === | |||
== Refinement with [http://www.phenix-online.org/documentation/refinement.htm phenix.refine] == | == Refinement with [http://www.phenix-online.org/documentation/refinement.htm phenix.refine] == | ||