Phenix: Difference between revisions

Phenix (edit)

548 bytes added , 5 December 2010

1,328

edits

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     phenix.refine data.hkl model.pdb main.reference_model_restraints=True reference_model.file=reference.pdb
 The behaviour can be modified with the keywords <font face="Courier">reference_model.limit</font> (default 15 degrees) and <font face="Courier">reference_model.sigma</font> (default probably 1 degrees - the current documentation says 1 Angstrom which is probably not right).
-See the [http://www.phenix-online.org/documentation/refinement.htm#anch26 full documentation].
+In the case where your working model has four chains (A, B, C, D) and your
+reference model has only chain A, the selections would look like this:
+ refinement.reference_model.reference_group {
+     reference = chain A
+     selection = chain A
+   }
+ refinement.reference_model.reference_group {
+     reference = chain A
+     selection = chain B
+   }
+ refinement.reference_model.reference_group {
+     reference = chain A
+     selection = chain C
+   }
+ refinement.reference_model.reference_group {
+     reference = chain A
+     selection = chain D
+   }
+See the [http://www.phenix-online.org/documentation/refinement.htm#anch26 documentation].
 ==== TLS ====