Phenix: Difference between revisions

26 bytes removed ,  2 December 2018
Line 894: Line 894:
  export PHENIX_ROSETTA_PATH=/usr/local/src/rosetta_src_2017.08.59291_bundle
  export PHENIX_ROSETTA_PATH=/usr/local/src/rosetta_src_2017.08.59291_bundle
(or similarly for .cshrc) and
(or similarly for .cshrc) and
  rosetta.build_phenix_interface
  rosetta.build_phenix_interface nproc=2
needs to be run; the latter step takes hours when doing it for the first time. (According to the docs, this is only needed for rosetta_refine.)
needs to be run; the latter step takes hours when doing it for the first time. (According to the docs, this is only needed for rosetta_refine.)


Line 900: Line 900:
* if the Phenix binary installer is not used: the Phenix source installer requires (on Fedora and RHEL) the openssl-devel and libXt-devel to be installed on the system
* if the Phenix binary installer is not used: the Phenix source installer requires (on Fedora and RHEL) the openssl-devel and libXt-devel to be installed on the system
* to re-compile Rosetta: go to the main/source directory and issue:  
* to re-compile Rosetta: go to the main/source directory and issue:  
  ./scons.py -j8 mode=release bin
  phenix.python scons.py bin mode=release extras=python  -j 2
(The -j8 should be used if your machine has 8 or more cores.)


== See also ==
== See also ==
1,330

edits