Programs to convert X-ray diffraction image file formats to graphics file formats: Difference between revisions

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Programs to convert X-ray diffraction image file formats to graphics file formats (edit)

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Bureaucrats

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 Specific program suggestions:
-* [http://www.ccp4.ac.uk/html/DiffractionImage.html|''diff2jpeg''] - a CCP4 utility within the "DiffractionImage" library for handling different diffraction file formats.
+* [http://legacy.ccp4.ac.uk/html/DiffractionImage.html diff2jpeg] - a CCP4 utility within the "DiffractionImage" library for handling different diffraction file formats.
-* [http://ccp4wiki.org/~ccp4wiki/wiki/index.php?title=CCP4i_diffraction_image_display_%28idiffdisp%29|''idiffdisp''] - a CCP4 utility.
+* [http://www.ysbl.york.ac.uk/~cowtan/ccp4wiki/wiki25.html idiffdisp] - a CCP4 utility.
-* [http://www.ccp4.ac.uk/dist/html/ipdisp.html|''ipdisp''] - a CCP4 utility.
+* [http://legacy.ccp4.ac.uk/dist/html/ipdisp.html. ipdisp] - a CCP4 utility.
-* [http://www.mrc-lmb.cam.ac.uk/harry/mosflm/|''Mosflm''] has capability including control over grayscale.  See FAQ section for details.
+* [http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ Mosflm] has capability including control over grayscale.  See FAQ section for details.
-* [http://www.scripps.edu/~arvai/adxv.html|''ADXV''] - reportedly easy to install and can save in TIFF format.  Also will save image to match coloring in view window.
+* [http://www.scripps.edu/~arvai/adxv.html ADXV] - reportedly easy to install and can save in TIFF format.  Also will save image to match coloring in view window.
-* [http://www.marresearch.com/download.html#Utilities|''Marview''] - can be installed using Linux_glibc-2.3.3 (RedHat9, WS3, etc).  Just download it, unpack (gunzip marView.gz).
+* [http://www.marresearch.com/download.html#Utilities Marview] - can be installed using Linux_glibc-2.3.3 (RedHat9, WS3, etc).  Just download it, unpack (gunzip marView.gz).
      first: chmod a+x marView
      a) to run the program from terminal:
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 * demo version of [http://www.rigaku.com/downloads/software/index.html#free|''d*TREK''] is freely available from Rigaku and has dtdisplay for this purpose.
-* [http://cci.lbl.gov/labelit|''Labelit'']
+* [http://cci.lbl.gov/labelit Labelit]
      - labelit.png <filename> <output.png> [-large]
-* [http://www.imagemagick.org/script/index.php|''ImageMagick''] - part of most linux distros.  See also [https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind0910&L=CCP4BB&D=0&X=2FA4086DA38435B93C&Y=att29%40cornell.edu&P=196309|''James Holton's helpful and detailed reply''] made to the CCP4bb on October 21, 2009 to the original post.
+* [http://www.imagemagick.org/script/index.php ImageMagick] - part of most linux distros.  See also [https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=ind0910&L=CCP4BB&D=0&X=2FA4086DA38435B93C&Y=att29%40cornell.edu&P=196309|''James Holton's helpful and detailed reply''] made to the CCP4bb on October 21, 2009 to the original post.
      - convert -depth 16 -type Grayscale -colorspace GRAY -endian LSB -size 3072x3072+512 GRAY:test_0_001.img test_0_001.jpg