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Characterisation
- Pfam
- ExPASy ProtParam Reports basic properties of a protein incl. reisdue composition, molecular weight, and predicted extinction coefficients.
- SMART Domain Architecture
- EMBNet Tools
- SERp Surface Entropy Reduction Prediction Server for designing surface (lysine) mutations
Disorder predictionMultiple Sequence Alignment
- Clustalw General purpose multiple sequence alignment @ EBI
- ESPript Generate "pretty" Postscript/PDF output from Multalin
- Indonesia Java structure-based sequence alignment
- Jalview Java tool for MSA viewing, analysis and creation of publication-quality plots. Can run Clustalw, MAFFT and MUSCLE alignments.
- MUSCLE Multiple sequence comparison by log-expectation @ EBI
- MAFFT Multiple sequence alignment and NJ / UPGMA phylogeny @ EBI
- Multalin Multiple sequence alignment with hierarchical clustering
- Tcoffee A novel method for multiple sequence alignments. 3DCoffee mode performs structure-based sequence alignments