Servers for structure analysis: Difference between revisions
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* [http://molprobity.biochem.duke.edu/ Molprobity] | * [http://molprobity.biochem.duke.edu/ Molprobity] | ||
* [http://scop.mrc-lmb.cam.ac.uk/scop/ SCOP] - Structural Classification of Proteins | * [http://scop.mrc-lmb.cam.ac.uk/scop/ SCOP] - Structural Classification of Proteins | ||
* [http://caps.ncbs.res.in/dsdbase//dsdbase.html]- Database of disulfides in proteins | |||
=== disulfides === | |||
* [http://caps.ncbs.res.in/dsdbase//dsdbase.html DSDBASE] - Database of disulfides in proteins | |||
* [http://www.ehscenter.org/dbd disulfide by design] - easy to install and to run. You put in a PDB file and the program will look in the structure where disulphide bonds are possible. It also ranks the candidates in energies. Finally, it can generate a PDB file with a particular disulphide. | |||
* [http://eagle.mmid.med.ualberta.ca/forms/ssbond.html SSBOND] - Bart Hazes' server; sourcecode available | |||
Latest revision as of 20:38, 29 May 2008
Analysis[edit | edit source]
- Molprobity
- SCOP - Structural Classification of Proteins
disulfides[edit | edit source]
- DSDBASE - Database of disulfides in proteins
- disulfide by design - easy to install and to run. You put in a PDB file and the program will look in the structure where disulphide bonds are possible. It also ranks the candidates in energies. Finally, it can generate a PDB file with a particular disulphide.
- SSBOND - Bart Hazes' server; sourcecode available