Phenix: Difference between revisions

111 bytes added ,  27 August 2010
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== Crystallographic data ==
== Crystallographic data ==


* [http://www.phenix-online.org/documentation/xtriage.htm phenix.xtriage] - assessing data quality
=== [http://www.phenix-online.org/documentation/xtriage.htm phenix.xtriage] - assessing data quality ===
* [http://www.phenix-online.org/documentation/explore_metric_symmetry.htm phenix.explore_metric_symmetry] <font face="Courier">--unit_cell=145,44,67,90,110.5,90 --space_group=C2 --other_unit_cell=67,44,136,90,96,90 --other_space_group=p2</font> - investigate different settings
 
* [http://www.phenix-online.org/documentation/reflection_statistics.htm phenix.reflection_statistics] - compare datasets (in 1 or 2 files)
=== [http://www.phenix-online.org/documentation/explore_metric_symmetry.htm phenix.explore_metric_symmetry] - investigate different settings ===
* [http://www.phenix-online.org/documentation/xmanip.htm phenix.xmanip] - Structure factor file manipulations
 
* phenix.model_vs_data - not yet documented. Just use "phenix.model_vs_data model.pdb data.hkl" where data.hkl is a reflection file in most of known formats
phenix.explore_metric_symmetry --unit_cell=145,44,67,90,110.5,90 --space_group=C2 --other_unit_cell=67,44,136,90,96,90 --other_space_group=p2
* [http://www.phenix-online.org/documentation/fmodel.htm phenix.fmodel] - calculate structure factors from model
 
* phenix.cif_as_mtz
=== [http://www.phenix-online.org/documentation/reflection_statistics.htm phenix.reflection_statistics] - compare datasets ===
There may be one or two data files.
 
=== [http://www.phenix-online.org/documentation/xmanip.htm phenix.xmanip] - structure factor file manipulations ===
 
=== phenix.model_vs_data - statistics ===
 
not yet documented. Just use "phenix.model_vs_data model.pdb data.hkl" where data.hkl is a reflection file in most of known formats
 
=== [http://www.phenix-online.org/documentation/fmodel.htm phenix.fmodel] - calculate structure factors from model ===
 
=== phenix.cif_as_mtz - convert cif to mtz format ===


== Experimental phasing ==
== Experimental phasing ==
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