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Performance: Difference between revisions
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→Single-machine considerations
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# REFINE(INTEGRATE)= ! (empty list) makes INTEGRATE go much faster through the frames, since frames are processed less often when analyzing a batch of frames, and no geometry refinement takes place. | # REFINE(INTEGRATE)= ! (empty list) makes INTEGRATE go much faster through the frames, since frames are processed less often when analyzing a batch of frames, and no geometry refinement takes place. | ||
# XDS with the MAXIMUM_NUMBER_OF_JOBS keyword can use [[Performance#Cluster|several machines]]. This requires some setup as explained at the bottom of [http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/downloading.html]. | # XDS with the MAXIMUM_NUMBER_OF_JOBS keyword can use [[Performance#Cluster|several machines]]. This requires some setup as explained at the bottom of [http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/downloading.html]. | ||
# Hyperthreading (SMT), | # Hyperthreading (SMT), usually available on Intel CPUs, is often beneficial. A "virtual" core has only about 20% performance of a "physical" core but it comes at no cost - you just have to switch it on in the BIOS of the machine. | ||
# | # NUMBER_OF_IMAGES_IN_CACHE avoids repeated (3-fold) reading of data frames in the INTEGRATE task during processing of a batch of frames. This comes at the expense of memory (RAM) and is discussed in [[Eiger]]. The default is DELPHI/OSCILLATION_RANGE+1 and is adequate. Only on low-memory systems (e.g a 8GB RAM machine for processing Eiger 16M data collected with 0.1° oscillation range, at DELPHI=5 and MAXIMUM_NUMBER_OF_JOBS=1) should this be set to 0, to conserve memory and avoid slow processing due to thrashing, or even killed XDS processes. | ||
== Cluster == | == Cluster == | ||