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== Programs ==
* [[XDS]]
* [[XSCALE]]
* [[XDSCONV]]
* [[VIEW]] (obsolete)
* [[XDS-Viewer]] open-source [[VIEW]] replacement
* [[XDSSTAT]] (this is not part of the XDS package)
* [[Jiffies]] (little helpful scripts)
* [[SIM_MX]] (this is not part of the XDS package)
* [[adxv]] (this is not part of the XDS package)
* [[XDSGUI]] (this is not part of the XDS package)

== Using XDS ==
* [https://www.youtube.com/watch?v=3WU9NrILECo XDS and XDSGUI. SBGrid Webinar by Kay Diederichs, May 2020] [https://strucbio.biologie.uni-konstanz.de/pub/Crystallographic_data_processing_with_XDS_using_XDSGUI.pdf slides of the talk]
* [[XDS.INP]]
* [[generate_XDS.INP]] - quick procedure to obtain XDS.INP for MarCCD, ADSC, Pilatus, ... detectors
* [[Tutorial(First_Steps)|Tutorial]] Quick beginner's walk-through if you just want to get going.
* [https://{{SERVERNAME}}/pub/MWhitley_CSHL-2018_XDS-Tutorial.pdf Matthew J. Whitley's excellent tutorial] about XDS processing with [[XDSGUI]], from the 2018 CSHL X-Ray Methods in Structural Biology Course.
* [[FAQ]]
* [[Processing]]
* [[IDXREF]] with subtopics [[Obtaining ORGX ORGY]], [[Ice rings]], [[Indexing]], [[Reindexing]]
* [[CORRECT]]
* [[Small molecules]] how to process difficult datasets, or those with few reflections
* worked-out '''examples''': see in particular the five projects ([[2QVO]], [[3CSL]], [[simulated-1g1c]], [[1Y13]] and [[2VB1]]) at the bottom of [[Quality Control]].
* [[XDSGUI]]
* [https://www.youtube.com/watch?v=XBgqiEXQR-0 Principles of data processing with XDS.] Video recorded at SBGrid/NE-CAT workshop 2014; the PDF is [https://strucbio.biologie.uni-konstanz.de/pub/Principles_of_data_processing_with_XDS.pdf here]. The sound is poor.

== Typical procedures ==
* [[Space group determination]], see also [[Reindexing]] and [[Indexing]]
* [[Optimization]], subtopics [[MINIMUM_ZETA]], [[Aliens]], see also [[Ice rings]]
* [[Determining VALUE_RANGE_FOR_TRUSTED_DETECTOR_PIXELS]]
* [[Tips and Tricks]]
* [[Scaling with SCALA]]

== XDS development ==
* [[INTEGRATE]] - how does INTEGRATE work?
* [[Quality Control]]
* [[Known Bugs]]
* [[Wishlist]]
* [[Features that are not officially documented]]

== external Links ==

* [https://xia2.github.io/ xia2] Automated Data Reduction