Xds: Difference between revisions
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== What is XDS, and how to obtain it? == | == What is XDS, and how to obtain it? == | ||
XDS is a program written for the "reduction" of 2-dimensional data images ("frames") obtained from crystals irradiated with X-rays. | XDS is a program written for the "reduction" of 2-dimensional data images ("frames") obtained from crystals irradiated with monochromatic X-rays. | ||
The author of the program is Wolfgang Kabsch (Wolfgang dot Kabsch at mpimf-heidelberg dot mpg dot de). | The author of the program is Wolfgang Kabsch (Wolfgang dot Kabsch at mpimf-heidelberg dot mpg dot de). | ||
Revision as of 23:16, 13 December 2007
What is XDS, and how to obtain it?
XDS is a program written for the "reduction" of 2-dimensional data images ("frames") obtained from crystals irradiated with monochromatic X-rays.
The author of the program is Wolfgang Kabsch (Wolfgang dot Kabsch at mpimf-heidelberg dot mpg dot de).
The program is free for academic use, and can be downloaded from http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/downloading.html .
Documentation is at http://www.mpimf-heidelberg.mpg.de/~kabsch/xds .
Links to XDS papers by Wolfgang Kabsch
J. Appl. Cryst. (1988). 21, 67-72. Automatic indexing of rotation diffraction patterns.
Chapters 11.3 and 25.2.9 in International Tables for Crystallography Volume F: Crystallography of Biological Macromolecules (don't know the link to PDFs of these)
Purpose of the Wiki
The purpose of this Wiki is to provide an accurate resource for XDS users, and to provide explanations and hints for the successful use of XDS. I (Kay Diederichs) try to keep the Wiki up-to-date with XDS versions and insights. I collect Tips and Tricks for XDS usage, explanations of its output, and recommendations for the parameters in XDS.INP (if it appears useful to deviate from their defaults).
There is also a wishlist, and Known Bugs, and Quality Control.
Use of the Wiki
The MediaWiki software used here works in the same way as the well-known Wikipedia. This means that anyone with a userid and password can edit existing pages, and create new ones. I might enable or disable account creation as it appears suitable. If you would like to get an account, and "create login" does not appear at http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/Special:Userlogin, email me, Kay dot Diederichs at uni-konstanz dot de, to have me enable it temporarily. I ask you to choose the user name such that your real name may be recognized.
To see what's there already, go to http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/Special:Allpages . A good starting point is the article about XDS.INP where the keywords and parameters for running XDS are described.