2,684
edits
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MAXIMUM_NUMBER_OF_JOBS=6 | MAXIMUM_NUMBER_OF_JOBS=6 | ||
performs best for a 2-Xeon X5570 machine with 24GB of memory and a RAID1 consisting of 2 1TB SATA disks. It should be noted that the dataset has 27GB, and in 296 seconds this means 92 MB/s continuous reading. The processing time is thus limited by the disk access, not by the CPU. And no, the data are not simply read from RAM (tested by "echo 3 > /proc/sys/vm/drop_caches before the XDS run). | performs best for a 2-Xeon X5570 machine with 24GB of memory and a RAID1 consisting of 2 1TB SATA disks. It should be noted that the dataset has 27GB, and in 296 seconds this means 92 MB/s continuous reading. The processing time is thus limited by the disk access, not by the CPU. And no, the data are not simply read from RAM (tested by "echo 3 > /proc/sys/vm/drop_caches before the XDS run). | ||
SUBSET OF INTENSITY DATA WITH SIGNAL/NOISE >= -3.0 AS FUNCTION OF RESOLUTION | |||
RESOLUTION NUMBER OF REFLECTIONS COMPLETENESS R-FACTOR R-FACTOR COMPARED I/SIGMA R-meas Rmrgd-F Anomal SigAno Nano | |||
LIMIT OBSERVED UNIQUE POSSIBLE OF DATA observed expected Corr | |||
2.91 15799 2114 2147 98.5% 2.3% 2.5% 15787 73.42 2.6% 1.1% -15% 0.705 1969 | |||
2.06 39607 3830 3856 99.3% 2.5% 2.8% 39602 81.49 2.6% 0.9% -11% 0.750 3794 | |||
1.68 64423 5068 5087 99.6% 3.1% 3.3% 64415 82.27 3.3% 1.0% -3% 0.843 5018 | |||
1.45 72869 6147 6163 99.7% 3.2% 3.5% 72867 77.43 3.4% 1.0% 0% 0.833 6055 | |||
1.30 71079 6652 6657 99.9% 3.3% 3.5% 71079 70.69 3.4% 1.1% 8% 0.865 6506 | |||
1.19 74584 7287 7298 99.8% 3.2% 3.4% 74575 66.78 3.4% 1.2% 5% 0.870 7060 | |||
1.10 84893 8268 8278 99.9% 3.5% 3.7% 84865 62.98 3.6% 1.3% 5% 0.858 7983 | |||
1.03 87893 8585 8603 99.8% 4.2% 4.4% 87859 56.04 4.4% 1.5% 4% 0.828 8238 | |||
0.97 92833 9457 9465 99.9% 5.2% 5.6% 92810 48.70 5.5% 1.7% 6% 0.802 9010 | |||
0.92 83981 9911 9927 99.8% 5.7% 6.3% 83954 41.48 6.0% 2.1% 5% 0.785 9362 | |||
0.88 74101 9620 9621 100.0% 6.3% 7.2% 74083 35.53 6.7% 2.6% 5% 0.785 9041 | |||
0.84 81383 11511 11518 99.9% 6.8% 7.7% 81361 30.26 7.3% 3.3% 1% 0.760 10616 | |||
0.81 67616 10240 10247 99.9% 7.1% 7.8% 67596 25.84 7.7% 4.2% 1% 0.782 9368 | |||
0.78 74077 11807 11817 99.9% 7.2% 7.3% 74049 22.26 7.8% 5.2% 1% 0.797 10697 | |||
0.75 86236 13831 13839 99.9% 8.5% 8.7% 86206 18.77 9.3% 6.7% 2% 0.809 12497 | |||
0.73 64601 10481 10488 99.9% 10.4% 10.5% 64573 15.77 11.3% 8.2% 2% 0.810 9375 | |||
0.71 71886 11727 11741 99.9% 12.8% 13.0% 71835 13.05 14.0% 10.6% 2% 0.800 10420 | |||
0.69 80233 13156 13163 99.9% 16.5% 16.9% 80130 10.32 18.1% 13.7% 1% 0.796 11661 | |||
0.67 84259 14746 14766 99.9% 22.0% 22.5% 84056 7.61 24.1% 19.6% 3% 0.789 12468 | |||
0.65 60775 15579 16551 94.1% 27.5% 30.3% 59893 4.49 31.7% 32.3% 1% 0.723 8936 | |||
total 1433128 190017 191232 99.4% 3.3% 3.5% 1431595 33.18 3.5% 3.5% 2% 0.801 170074 | |||
== Comparison of XDS and published results of data processing == | == Comparison of XDS and published results of data processing == | ||
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<tr><b> | <tr><b> | ||
<td> </td> | <td> </td> | ||
<td> | <td> resolution (highest resolution range) | ||
<td> observations </td> | |||
<td> | <td> unique reflections </td> | ||
<td> | <td> Multiplicity </td> | ||
<td> | <td> Completeness (%) </td> | ||
<td> | <td> R merge (%) </td> | ||
<td> mean I/sigma </td> | |||
<td> R merge | |||
<td> | |||
</b></tr> | </b></tr> | ||
<tr><b> | <tr><b> | ||
<td> published </td> | <td> published </td> | ||
<td> | <td> 30-0.65Å (0.67-0.65Å) </td> | ||
<td> | <td> 1331953 (12764) </td> | ||
<td> | <td> 187165 (6353) </td> | ||
<td> | <td> 7.1 (2.7) </td> | ||
<td> | <td> 97.6 (67.3) </td> | ||
<td> 4.5 (18.4) </td> | |||
<td> | <td> 36.2 (4.2) </td> | ||
<td> | |||
</b></tr> | </b></tr> | ||
<tr><b> | <tr><b> | ||
<td> XDS </td> | <td> XDS </td> | ||
<td> | <td> 1433128 (60775) </td> | ||
<td> | <td> 190017 (15579) </td> | ||
<td> | <td> 99.4 (94.1) </td> | ||
<td> 7.5 (3.9) </td> | |||
<td> 3.3 (27.5) </td> | |||
<td> 33.2 (4.5) </td> | |||
<td> 3.9 </td> | |||
<td> | |||
<td> 4. | |||
</b></tr> | </b></tr> | ||
</table> | </table> |