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Eiger: Difference between revisions
→Troubleshooting
(fix upper limit for memory used for the cache if NUMBER_OF_IMAGES_IN_CACHE is _not_ specified) |
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== Troubleshooting == | == Troubleshooting == | ||
* make sure that master.h5 and the corresponding data.h5 files remain together as collected, and '''don't rename the data.h5 files''' - they are referred to from master.h5. If you change the names of the data.h5 files or copy them somewhere else, that link is broken unless you fix master.h5. | * make sure that master.h5 and the corresponding data.h5 files remain together as collected, and '''don't rename the data.h5 files''' - they are referred to from master.h5. If you change the names of the data.h5 files or copy them somewhere else, that link is broken unless you fix master.h5. | ||
* the very latest XDS (BUILT=20170215) has a problem with reading Eiger data - the master filename is not correctly constructed. The workaround is to either use the previous [ftp://turn5.biologie.uni-konstanz.de/xds/2016-dec05/ BUILT of 20161205], or to place a symlink e.g. <code>ln -s my_data_master.h5 my_data_000001.h5</code>. The next BUILT will of course fix the problem. | * the very latest XDS (BUILT=20170215) has a problem with reading Eiger data - the master filename is not correctly constructed. The workaround is to either use the previous [ftp://turn5.biologie.uni-konstanz.de/xds/2016-dec05/ BUILT of 20161205], or to place a symlink e.g. <code>ln -s my_data_master.h5 my_data_000001.h5</code>. The next BUILT will of course fix the problem. The main difference between the two latest builds is in XDSCONV, so you can use all executables from the earlier build, but replace XDSCONV with the latest version. | ||
== XDS_from_H5.py script for generating XDS.INP given a master .h5 file == | == XDS_from_H5.py script for generating XDS.INP given a master .h5 file == | ||