LIB: Difference between revisions

(3 intermediate revisions by the same user not shown)

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! or

! gfortran -fpic test_generic_client.f90 -shared -o libtest_generic_client.so

! (~~this does not include~~ the ~~compiler's~~ libgfortran.so and libquadmath.so ~~into~~ the ~~library~~; ~~don't know how to achieve this so~~

! (adding -static-libgfortran and -static-libquadmath should put these into the library as well so that it can be distributed.

~~! gfortran is only useful if~~ it ~~is anyway installed on the machine~~)

! This requires a gfortran version higher than 12. For older gfortran versions, libgfortran.so and libquadmath.so can be

! renamed to something that the linker does not search for; it will then include libgfortran.a and libquadmath.a)

! The resulting file can be used with a LIB=./libtest_generic_client.so line in XDS.INP, and enables

! reading of data files with a 7680 bytes header plus 1024*1024 pixels of integer data, without any record structure.

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! 'NX' (integer) output Number of pixels along X

! 'NY' (integer) output Number of pixels along Y

! 'NBYTE' (integer) output Number of bytes in the image~~...~~ X*Y*~~DEPTH~~

! 'NBYTE' (integer) output Number of bytes in the image is X*Y*NBYTE

! 'QX' (4*REAL) output Pixel size

! 'QY' (4*REAL) output Pixel size

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# [https://github.com/dectris/neggia Dectris Neggia-plugin] to read HDF5 written by Dectris-supplied software of Eiger detectors

# [https://github.com/DiamondLightSource/durin Diamond's Durin-plugin] to read HDF5 written by Eiger detectors at Diamond (and presumably elsewhere); latest binaries for MacOS and Linux (RHEL6) as well as example XDS.INP and source at https://github.com/DiamondLightSource/durin/releases/latest . A binary for M1 ~~Mac~~ is available - see [[Installation]]

# [https://github.com/DiamondLightSource/durin Diamond's Durin-plugin] to read HDF5 written by Eiger detectors at Diamond (and presumably elsewhere); latest binaries for MacOS and Linux (RHEL6) as well as example XDS.INP and source at https://github.com/DiamondLightSource/durin/releases/latest . A binary for Apple Silicon (M1, M2, M3, M4 ...) Macs is available - see [[Installation]]

# [https://git.embl.de/nikolova/xds-zcbf/ EMBL-Hamburg's zcbf-plugin] to read gzip-compressed CBF files without intermediate file . A binary for M1 ~~Mac~~ is available - see [[Installation]].

# [https://git.embl.de/nikolova/xds-zcbf/ EMBL-Hamburg's zcbf-plugin] to read gzip-compressed CBF files without intermediate file . A binary for Apple Silicon (M1, M2, M3, M4 ...) Macs is available - see [[Installation]].

Plugins for Linux and Intel-Mac can also be obtained through [https://www.globalphasing.com/autoproc/ GPhL's autoPROC].

@@ Line 129: / Line 129: @@
 ! or
 ! gfortran -fpic test_generic_client.f90 -shared -o libtest_generic_client.so
-! (this does not include the compiler's libgfortran.so and libquadmath.so into the library; don't know how to achieve this so
+! (adding -static-libgfortran and -static-libquadmath should put these into the library as well so that it can be distributed.
-! gfortran is only useful if it is anyway installed on the machine)
+! This requires a gfortran version higher than 12. For older gfortran versions, libgfortran.so and libquadmath.so can be
+! renamed to something that the linker does not search for; it will then include libgfortran.a and libquadmath.a)
 ! The resulting file can be used with a LIB=./libtest_generic_client.so line in XDS.INP, and enables
 ! reading of data files with a 7680 bytes header plus 1024*1024 pixels of integer data, without any record structure.
@@ Line 531: / Line 532: @@
      !  'NX' (integer)                  output  Number of pixels along X
      !  'NY' (integer)                  output  Number of pixels along Y
-     !  'NBYTE' (integer)               output  Number of bytes in the image... X*Y*DEPTH
+     !  'NBYTE' (integer)               output  Number of bytes in the image is X*Y*NBYTE
      !  'QX' (4*REAL)                   output  Pixel size
      !  'QY' (4*REAL)                   output  Pixel size
@@ Line 687: / Line 688: @@
 # [https://github.com/dectris/neggia Dectris Neggia-plugin] to read HDF5 written by Dectris-supplied software of Eiger detectors
-# [https://github.com/DiamondLightSource/durin Diamond's Durin-plugin] to read HDF5 written by Eiger detectors at Diamond (and presumably elsewhere); latest binaries for MacOS and Linux (RHEL6) as well as example XDS.INP and source at https://github.com/DiamondLightSource/durin/releases/latest . A binary for M1 Mac is available - see [[Installation]]
+# [https://github.com/DiamondLightSource/durin Diamond's Durin-plugin] to read HDF5 written by Eiger detectors at Diamond (and presumably elsewhere); latest binaries for MacOS and Linux (RHEL6) as well as example XDS.INP and source at https://github.com/DiamondLightSource/durin/releases/latest . A binary for Apple Silicon (M1, M2, M3, M4 ...) Macs is available - see [[Installation]]
-# [https://git.embl.de/nikolova/xds-zcbf/ EMBL-Hamburg's zcbf-plugin] to read gzip-compressed CBF files without intermediate file . A binary for M1 Mac is available - see [[Installation]].
+# [https://git.embl.de/nikolova/xds-zcbf/ EMBL-Hamburg's zcbf-plugin] to read gzip-compressed CBF files without intermediate file . A binary for Apple Silicon (M1, M2, M3, M4 ...) Macs is available - see [[Installation]].
 Plugins for Linux and Intel-Mac can also be obtained through [https://www.globalphasing.com/autoproc/ GPhL's autoPROC].