Generate XDS.INP: Difference between revisions

(3 intermediate revisions by the same user not shown)

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Usage is just (don't forget the quotation marks!):

generate_XDS.INP "/home/myname/frms/mydata_1_???.img"

XDS [https://xds.mr.mpg.de/html_doc/xds_parameters.html#NAME_TEMPLATE_OF_DATA_FRAMES= supports] bzip2~~-ed frames~~. ~~Thus, when~~ specifying the frame name parameter of the script, you should leave out any .bz2 extension.

For .h5 files you need to load the *master.h5 , and you don't need the quotation marks:

generate_XDS.INP /home/myname/frms/mydata_1_master.h5

XDS [https://xds.mr.mpg.de/html_doc/xds_parameters.html#NAME_TEMPLATE_OF_DATA_FRAMES= supports] compression with gzip or bzip2. When specifying the frame name parameter of the script, you should leave out any .gz or .bz2 extension. Note that the processing of *.cbf.gz files can be made faster by [[Installation|loading]] the xds-zcbf.so [[LIB|plugin]].

For ~~improved~~ interaction with [[XDSGUI]], it is advantageous to provide an ''absolute'' filename for the data files - one that starts with a slash ("/").

For good interaction with [[XDSGUI]], it is advantageous to provide an ''absolute'' filename for the data files - one that starts with a slash ("/").

== The script ==

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Line 17:

<pre>#!/bin/bash

<pre>

#!/bin/bash

# purpose: generate XDS.INP

#

@@ Line 5: / Line 5: @@
 Usage is just (don't forget the quotation marks!):
   generate_XDS.INP "/home/myname/frms/mydata_1_???.img"
-XDS [https://xds.mr.mpg.de/html_doc/xds_parameters.html#NAME_TEMPLATE_OF_DATA_FRAMES= supports] bzip2-ed frames. Thus, when specifying the frame name parameter of the script, you should leave out any .bz2 extension.
+For .h5 files you need to load the *master.h5 , and you don't need the quotation marks:
+ generate_XDS.INP /home/myname/frms/mydata_1_master.h5
+XDS [https://xds.mr.mpg.de/html_doc/xds_parameters.html#NAME_TEMPLATE_OF_DATA_FRAMES= supports] compression with gzip or bzip2. When specifying the frame name parameter of the script, you should leave out any .gz or .bz2 extension. Note that the processing of *.cbf.gz files can be made faster by [[Installation|loading]] the xds-zcbf.so [[LIB|plugin]].
-For improved interaction with [[XDSGUI]], it is advantageous to provide an ''absolute'' filename for the data files - one that starts with a slash ("/").
+For good interaction with [[XDSGUI]], it is advantageous to provide an ''absolute'' filename for the data files - one that starts with a slash ("/").
 == The script ==
@@ Line 15: / Line 17: @@
 <div class="mw-collapsible-content">
-<pre>#!/bin/bash
+<pre>
+#!/bin/bash
 # purpose: generate XDS.INP
 #