2cbf: Difference between revisions
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This converts all .img files in ../images to miniCBF files with the extension .img.cbf in the current directory. | This converts all .img files in ../images to miniCBF files with the extension .img.cbf in the current directory. | ||
To have control over the number of digits encoding the frame number, one can use bash's printf command. Example: | |||
<pre> | <pre> | ||
#!/bin/bash | #!/bin/bash | ||
for j in $(seq 1 120); do | for j in $(seq 1 120); do | ||
echo Data_02_$(printf "%04d" "$j").sfrm | |||
done | done | ||
</pre> | </pre> | ||
To convert frames stored in Dectris-format .h5 files, one should replace "master" with a 6-digit framenumber, and use the [https://xds.mr.mpg.de/html_doc/xds_parameters.html#LIB= LIB=] keyword: | |||
echo collect_01_000001.h5 collect_1.cbf LIB=/usr/local/lib64/dectris-neggia.so | 2cbf | |||
2cbf | |||
Revision as of 20:08, 21 March 2021
2cbf is part of the XDS distribution. It converts any image file format that is known to XDS to a miniCBF file. This program is also used by XDSGUI.
Single-line example (bash shell):
for i in ../images/*img ; do echo $i; echo $i `basename $i`.cbf | 2cbf ; done
This converts all .img files in ../images to miniCBF files with the extension .img.cbf in the current directory.
To have control over the number of digits encoding the frame number, one can use bash's printf command. Example:
#!/bin/bash for j in $(seq 1 120); do echo Data_02_$(printf "%04d" "$j").sfrm done
To convert frames stored in Dectris-format .h5 files, one should replace "master" with a 6-digit framenumber, and use the LIB= keyword:
echo collect_01_000001.h5 collect_1.cbf LIB=/usr/local/lib64/dectris-neggia.so | 2cbf