Search results
Jump to navigation
Jump to search
- !JOB=XYCORR INIT COLSPOT IDXREF DEFPIX INTEGRATE CORRECT ...1 KB (117 words) - 15:22, 29 February 2008
- !JOB=XYCORR INIT COLSPOT IDXREF DEFPIX INTEGRATE CORRECT ...1 KB (115 words) - 15:20, 29 February 2008
- !JOB=XYCORR INIT COLSPOT IDXREF DEFPIX INTEGRATE CORRECT ...1 KB (117 words) - 15:19, 29 February 2008
- ...processed by [[XDS]] in a single run, provided JOB=ALL (or JOB=XYCORR INIT COLSPOT IDXREF DEFPIX INTEGRATE CORRECT) is chosen. ...1 KB (232 words) - 14:51, 27 October 2009
- ...[http://www.phenix-online.org Phenix]. It may in principle substitute the COLSPOT and IDXREF steps of XDS. ...815 bytes (129 words) - 13:22, 30 September 2019
- == optimizing the parameters for COLSPOT == ...s on the reflection positions stored in SPOT.XDS . This file is written by COLSPOT, and its contents is visualized in [[XDSGUI]]'s IDXREF tab (or e.g. with GN ...6 KB (952 words) - 15:34, 22 October 2019
- JOB= XYCORR INIT COLSPOT IDXREF DEFPIX INTEGRATE CORRECT ...1 KB (214 words) - 10:53, 29 January 2020
- * [[COLSPOT]] : find strong reflections for indexing on one or more frames ...2 KB (259 words) - 15:27, 22 October 2019
- # visualize BKGINIT.cbf (from [[INIT]]), or FRAME.cbf (from [[COLSPOT]]) with [[XDS-Viewer]], and click (left-mouse) into the middle of the beams ...out the true ORGX ORGY by inspecting [[IDXREF.LP]] . This works best if [[COLSPOT]] has seen a significant fraction of all frames.'' This procedure is [[Thau ...5 KB (830 words) - 05:36, 23 September 2025
- JOB= XYCORR INIT COLSPOT IDXREF DEFPIX INTEGRATE CORRECT ...2 KB (279 words) - 19:22, 24 March 2020
- ...i. In later runs, tweak parameters to optimize processing. JOB=XYCORR INIT COLSPOT IDXREF DEFPIX INTEGRATE CORRECT is only needed at the beginning i.e. for th ...konstanz.de/xds/index.php?search=COLSPOT&title=Special%3ASearch&fulltext=1 COLSPOT]</small> ...10 KB (1,651 words) - 13:58, 16 October 2025
- ...ng goes down when the number of available cores is increased) in the INIT, COLSPOT, IDXREF, INTEGRATE and CORRECT steps when using the [http://xds.mpimf-heide # the program scales very well in the COLSPOT and INTEGRATE steps when using the [http://xds.mpimf-heidelberg.mpg.de/html ...10 KB (1,597 words) - 22:55, 16 August 2022
- JOB= XYCORR INIT COLSPOT IDXREF ...3 KB (477 words) - 15:32, 30 April 2025
- ...to spot positions or not (or just 0 0 0). Thus it is useful directly after COLSPOT, but even more after IDXREF. Reflections of <code>SPOT-indexed.pdb</code> c ...4 KB (569 words) - 16:31, 8 March 2023
- JOB=XYCORR INIT COLSPOT IDXREF DEFPIX INTEGRATE CORRECT ...3 KB (440 words) - 19:22, 24 March 2020
- ..._parameters.html#SPOT_RANGE= SPOT_RANGE], together with strong pixels that COLSPOT found on this frame, marked with white pixels. IDXREF will use those spot p JOB= XYCORR INIT COLSPOT IDXREF DEFPIX ! INTEGRATE CORRECT ...25 KB (3,565 words) - 18:02, 12 October 2025
- ...NTATION CELL AXIS i.e. refine everything) could be used, but '''only if''' COLSPOT has seen '''all''' (or rather, a significant fraction of the) frames (see S JOB=XYCORR INIT COLSPOT IDXREF DEFPIX INTEGRATE CORRECT ...18 KB (2,653 words) - 11:50, 12 May 2021
- # sed -i -e 's/XYCORR INIT COLSPOT IDXREF DEFPIX INTEGRATE//' XDS.INP # use all frames for COLSPOT instead of only the first half: ...8 KB (1,158 words) - 20:45, 10 January 2025
- ...IT, COLSPOT, IDXREF tabs become black, indicating that XYCORR.LP, INIT.LP, COLSPOT.LP and [[IDXREF.LP]] have been created. We may take a look at the XYCORR, INIT, and COLSPOT tabs to see what XDS has to say about these steps. ...18 KB (2,363 words) - 18:36, 24 March 2020
- # enables multi-tasking by splitting the COLSPOT and INTEGRATE in COLSPOT.LP and INTEGRATE.LP may be incorrect if MAXIMUM_NUMBER_OF_JOBS > 1, and the ...5 KB (818 words) - 10:50, 12 February 2025