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If you do have bad outliers (e.g. shutter didn't open), and decide that you for now simply want to remove those frames, then you could rename the frames (just append ".bad" to the name), and re-run XDS from the INTEGRATE step. | If you do have bad outliers (e.g. shutter didn't open), and decide that you for now simply want to remove those frames, then you could rename the frames (just append ".bad" to the name), and re-run XDS from the INTEGRATE step. | ||
If you simply want the plots and glue them into your lab book, just run | ---- | ||
If you simply want the plots and glue them into your lab book, just run (assuming "ms688_2" is the name of your dataset!): | |||
setenv DATASET ms688_2 | |||
scalefactors > $DATASET.scales | |||
ln -s $DATASET.scales $DATASET.mosaicity | |||
ln -s $DATASET.scales $DATASET.divergence | |||
gnuplot<<EOF | gnuplot<<EOF | ||
set term png | set term png | ||
set grid | set grid | ||
set out 'scale.png' | set out 'scale.png' | ||
plot " | plot "$DATASET.scales" using 1:3 | ||
set out 'divergence.png' | set out 'divergence.png' | ||
plot " | plot "$DATASET.divergence" using 1:9 | ||
set out 'mosaicity.png' | set out 'mosaicity.png' | ||
plot " | plot "$DATASET.mosaicity" using 1:10 | ||
EOF | EOF | ||
rm -f $DATASET.{scales,mosaicity,divergence} | |||
to get | to get | ||
[[Image:scale.gif]] | [[Image:scale.gif]] | ||
[[Image:divergence.gif]] | [[Image:divergence.gif]] | ||
[[Image:mosaicity.gif]] | [[Image:mosaicity.gif]] | ||