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Scale many datasets: Difference between revisions
m
explain sed command with $ delimiter
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m (explain sed command with $ delimiter) |
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# the result of that is used for "mkdir" | # the result of that is used for "mkdir" | ||
mkdir $(echo $i|sed -e 's$../cows-pigs-people/$$' -e 's/_1_00100.cbf.gz//') | mkdir $(echo $i|sed -e 's$../cows-pigs-people/$$' -e 's/_1_00100.cbf.gz//') | ||
# (note the use of the $ delimiter instead of / if the pattern has file paths) | |||
done | done | ||
</pre> | </pre> | ||
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# use a reference data set to get consistent indexing: | # use a reference data set to get consistent indexing: | ||
sed -i 's$! REFERENCE_DATA_SET=xxx/XDS_ASCII.HKL $ REFERENCE_DATA_SET= ../x1_as_reference.hkl $' XDS.INP | sed -i 's$! REFERENCE_DATA_SET=xxx/XDS_ASCII.HKL $ REFERENCE_DATA_SET= ../x1_as_reference.hkl $' XDS.INP | ||
# (note the use of the $ delimiter instead of / if the pattern has file paths) | |||
# if using a reference data set, spacegroup and cell constants must be given | # if using a reference data set, spacegroup and cell constants must be given | ||
sed -i 's/SPACE_GROUP_NUMBER=0/SPACE_GROUP_NUMBER= 197/' XDS.INP | sed -i 's/SPACE_GROUP_NUMBER=0/SPACE_GROUP_NUMBER= 197/' XDS.INP | ||