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| XDS can be run in cluster mode using any command line job scheduling software such as Grid Engine, Condor, Torque/PBS, LSF, SLURM etc. We implemented Grid Engine. It is a distributed resource management system which monitors the CPU and memory usage of the available computing resources and schedules the job to the least used computer. Grid Engine was chosen due to its high scalability, cost effectiveness, ease of maintenance and high throughput. Grid Engine was developed by Sun Microsystems (Sun Grid Engine, SGE) and later acquired by Oracle and subsequently acquired by UNIVA. The latest versions became closed source, but the older ones are open source supplied with many Linux distributions including Redhat/CentOS 6.x. There is also open source Open Grid Scheduler [[http://gridscheduler.sourceforge.net/]], Son of Gridengine [[https://arc.liv.ac.uk/trac/SGE ]]
| | The following does ''not'' refer to the [http://xds.mpimf-heidelberg.mpg.de/html_doc/xds_parameters.html#CLUSTER_NODES= CLUSTER_NODES=] setup. The latter does ''not'' require a queueing system! |
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| The following does ''not'' refer to the [http://xds.mpimf-heidelberg.mpg.de/html_doc/xds_parameters.html#CLUSTER_NODES= CLUSTER_NODES=] setup. The latter does not require a queueing system.
| | XDS can be run in a cluster using any command line job scheduling software such as Grid Engine, Condor, Torque/PBS, LSF, SLURM etc. These are distributed resource management system which monitor the CPU and memory usage of the available computing resources and schedule jobs to the least used computers. |
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| == setup of XDS for a batch queue system == | | == setup of XDS for a batch queue system == |
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| In order to setup XDS for a queuing system, the ''forkxds'' script need to be changed to access the environment and send jobs to different machines. Example scripts used for Univa Grid Engine (UGA) at Diamond (from https://github.com/DiamondLightSource/fast_dp/tree/master/etc/uge_array - thanks to Graeme Winter!) are below; they may need to be changed according to the environment. Observe this uses the ''qsub'' command which submits forkxds_job to grid engine. | | In order to setup XDS for a queuing system, the ''forkxds'' script needs to be changed to access the environment and send jobs to different machines, and to switch off the ssh-based mechanism which the CLUSTER_NODES keyword employs. Example scripts used for Univa Grid Engine (UGA) at Diamond (from https://github.com/DiamondLightSource/fast_dp/tree/master/etc/uge_array - thanks to Graeme Winter!) are below; they may need to be changed according to the environment. Observe this uses the ''qsub'' command which submits forkxds_job to grid engine. |
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| <pre> | | <pre> |