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Generate XDS.INP: Difference between revisions
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m (→The script: v 0.96 add printout if ROTATION_AXIS inverted) |
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# revision 0.94 . KD 16/03/2020 bugfix for Bruker-cbf to make bc accept e.g. 3.1e-005 by using awk printf "%.5f" instead of awk print | # revision 0.94 . KD 16/03/2020 bugfix for Bruker-cbf to make bc accept e.g. 3.1e-005 by using awk printf "%.5f" instead of awk print | ||
# revision 0.95 . KD 29/07/2020 fix DLS Eiger HDF5 variant OSCILLATION_RANGE, STARTING_ANGLE. Attention: DLS Eiger variant needs h5dump 1.10 for OVERLOAD! | # revision 0.95 . KD 29/07/2020 fix DLS Eiger HDF5 variant OSCILLATION_RANGE, STARTING_ANGLE. Attention: DLS Eiger variant needs h5dump 1.10 for OVERLOAD! | ||
# revision 0.96 . KD 03/10/2020 make script echo detector serial number if inverted ROTATION_AXIS is detected. | # revision 0.96 . KD 03/10/2020 make script echo detector serial number if inverted ROTATION_AXIS is detected. | ||
REVISION="0. | # revision 0.97 . KD 19/10/2020 add UNTRUSTED_RECTANGLEs for Eiger2 (which has a few pixels less than Eiger (thanks to Andreas Förster) | ||
REVISION="0.97 (19-Oct-2020)" | |||
# | # | ||
| Line 941: | Line 942: | ||
! and does not seem to have any downsides. | ! and does not seem to have any downsides. | ||
eof | eof | ||
if [ $NX == "1475" ]; then | if [ $NX == "1028" -a $NY == "1062" ]; then | ||
# Eiger2 1M ; v0.97 numbers from Andreas Förster | |||
cat >> XDS.INP << eof | |||
UNTRUSTED_RECTANGLE= 0 1029 512 551 | |||
eof | |||
elif [ $NX == "1475" ]; then | |||
if ! grep -q Flat_field tmp2 ; then | if ! grep -q Flat_field tmp2 ; then | ||
cat >> XDS.INP << eof | cat >> XDS.INP << eof | ||
| Line 974: | Line 980: | ||
eof | eof | ||
fi | fi | ||
elif [ $NX == "2068" -a $NY == "2162" ]; then | |||
# Eiger2 4M ; v0.97 numbers from Andreas Förster | |||
cat >> XDS.INP << eof | |||
!EXCLUSION OF VERTICAL DEAD AREAS OF THE EIGER2 4M DETECTOR | |||
UNTRUSTED_RECTANGLE= 1028 1041 0 2163 | |||
!EXCLUSION OF HORIZONTAL DEAD AREAS OF THE EIGER 4M DETECTOR | |||
UNTRUSTED_RECTANGLE= 0 2069 512 551 | |||
UNTRUSTED_RECTANGLE= 0 2069 1062 1101 | |||
UNTRUSTED_RECTANGLE= 0 2069 1612 1651 | |||
eof | |||
elif [ $NX == "2463" ]; then | elif [ $NX == "2463" ]; then | ||
# Pilatus 6M | # Pilatus 6M | ||
| Line 1,007: | Line 1,023: | ||
UNTRUSTED_RECTANGLE= 0 3110 2717 2757 | UNTRUSTED_RECTANGLE= 0 3110 2717 2757 | ||
eof | eof | ||
elif [ $NX == "4150" | elif [ $NX == "3108" -a $NY == "3262" ]; then | ||
# Eiger2 9M ; v0.97 numbers from Andreas Förster | |||
cat >> XDS.INP << eof | |||
!EXCLUSION OF VERTICAL DEAD AREAS OF THE EIGER2 9M DETECTOR | |||
UNTRUSTED_RECTANGLE= 1028 1041 0 3262 | |||
UNTRUSTED_RECTANGLE= 2068 2081 0 3263 | |||
!EXCLUSION OF HORIZONTAL DEAD AREAS OF THE EIGER2 9M DETECTOR | |||
UNTRUSTED_RECTANGLE= 0 3109 512 551 | |||
UNTRUSTED_RECTANGLE= 0 3109 1062 1101 | |||
UNTRUSTED_RECTANGLE= 0 3109 1612 1651 | |||
UNTRUSTED_RECTANGLE= 0 3109 2162 2201 | |||
UNTRUSTED_RECTANGLE= 0 3109 2712 2751 | |||
eof | |||
elif [ $NX == "4150" -a $NY == "4371" ]; then | |||
# Eiger 16M | # Eiger 16M | ||
cat >> XDS.INP << eof | cat >> XDS.INP << eof | ||
| Line 1,022: | Line 1,051: | ||
UNTRUSTED_RECTANGLE= 2069 2082 0 4371 | UNTRUSTED_RECTANGLE= 2069 2082 0 4371 | ||
UNTRUSTED_RECTANGLE= 3109 3122 0 4371 | UNTRUSTED_RECTANGLE= 3109 3122 0 4371 | ||
eof | |||
elif [ $NX == "4148" -a $NY == "4362" ]; then | |||
# Eiger2 16M ; v0.97 numbers from Andreas Förster | |||
cat >> XDS.INP << eof | |||
!EXCLUSION OF HORIZONTAL DEAD AREAS OF THE EIGER2 16M DETECTOR | |||
UNTRUSTED_RECTANGLE= 1028 1041 0 4363 | |||
UNTRUSTED_RECTANGLE= 2068 2081 0 4363 | |||
UNTRUSTED_RECTANGLE= 3108 3121 0 4363 | |||
!EXCLUSION OF VERTICAL DEAD AREAS OF THE EIGER2 16M DETECTOR | |||
UNTRUSTED_RECTANGLE= 0 4149 512 551 | |||
UNTRUSTED_RECTANGLE= 0 4149 1062 1101 | |||
UNTRUSTED_RECTANGLE= 0 4149 1612 1651 | |||
UNTRUSTED_RECTANGLE= 0 4149 2162 2201 | |||
UNTRUSTED_RECTANGLE= 0 4149 2712 2751 | |||
UNTRUSTED_RECTANGLE= 0 4149 3262 3301 | |||
UNTRUSTED_RECTANGLE= 0 4149 3812 3851 | |||
eof | eof | ||
fi | fi | ||
| Line 1,079: | Line 1,124: | ||
The script makes use of many GNU commands, like <code>ls, grep, egrep, awk, cut, cat, echo, wc, bc, head, sed, tail, cp, od, python</code>. Some of them (like <code>od</code> and <code>python</code>) are only used in case of specific detectors (MarCCD and RAXIS, respectively). | The script makes use of many GNU commands, like <code>ls, grep, egrep, awk, cut, cat, echo, wc, bc, head, sed, tail, cp, od, python</code>. Some of them (like <code>od</code> and <code>python</code>) are only used in case of specific detectors (MarCCD and RAXIS, respectively). | ||
The script will only work if all the required commands are available. They reside in either the <code>coreutils</code> RPM, or specific RPMs (<code>gawk, sed, bc, grep, python</code> ...). Please note that to get the <code>strings</code> command on some Linux distributions (e.g. FC23) you need to install the <code>binutils</code> RPM package. | The script will only work if all the required commands are available. They reside in either the <code>coreutils</code> RPM, or specific RPMs (<code>gawk, sed, bc, grep, python</code> ...). Please note that to get the <code>strings</code> command on some Linux distributions (e.g. FC23) you need to install the <code>binutils</code> RPM package. | ||
For Eiger data processing, the <code>h5dump</code> program must be installed. This is part of <code>hdf5-tools</code> (Ubuntu) or <code>hdf5</code> (RHEL). | For Eiger data processing, the <code>h5dump</code> program must be installed. This is part of <code>hdf5-tools</code> (Ubuntu) or <code>hdf5</code> (RHEL). The .h5 files collected at Diamond Light Source require a very new version of h5dump (namely h5dump 1.10) to extract the OVERLOAD parameter from the .h5 file; this version is available by default in Ubuntu 20.04 and RHEL/CentOS 8. | ||
On Mac OS X, installation of the "Command Line Tools" (from http://developer.apple.com/downloads; requires Apple ID) is required (open a terminal and type <code>xcode-select --install</code>). These are also part of the (larger, but also free) [http://developer.apple.com/tools/xcode Xcode] package. This package comes with a license that has to be accepted by the user when running a Command Line Tool (e.g. <code>strings</code>) for the first time. | On Mac OS X, installation of the "Command Line Tools" (from http://developer.apple.com/downloads; requires Apple ID) is required (open a terminal and type <code>xcode-select --install</code>). These are also part of the (larger, but also free) [http://developer.apple.com/tools/xcode Xcode] package. This package comes with a license that has to be accepted by the user when running a Command Line Tool (e.g. <code>strings</code>) for the first time. | ||