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- aP [1,P1] mP [3,P2] [4,P2(1)]1 KB (91 words) - 12:49, 27 August 2010
- ...ted as CC<sub>1/2_i</sub>. The difference of the two quantities is ΔCC<sub>1/2</sub>. : <math>\Delta CC_{1/2}= CC_{1/2 overall}-CC_{1/2\_i} </math>2 KB (303 words) - 12:22, 6 September 2018
- character*1 :: axnam(3)=(/'a','b','c'/) open(1,file='XPARM.XDS')2 KB (273 words) - 10:51, 11 June 2014
- ...(ADSC Q315R, SN 930), 2015 : ROTATION_AXIS=1 0 0 whereas in 2010 it was -1 0 0 * BM30A (ESRF, ADSC) has ROTATION_AXIS=-1 0 0 (implemented in [[generate_XDS.INP]] on 2016-10-02)1 KB (224 words) - 18:13, 7 December 2020
- if(/BEAM +(\S*\d) +(\S*\d)/){ $x=$1; $y=$2; } # get X,Y beam if(/^[^!]*DETECTOR_DISTANCE= *(\S*\d)/) { $d=$1; } # d = detector distance2 KB (286 words) - 05:19, 31 May 2023
- The program can add a fixed number (default: 1) of adjacent input frames for each output frame. DATA_RANGE= 1 5002 KB (270 words) - 08:46, 15 June 2020
- 1 0 4 48445. 983.361 1 0 5 2124.59 283.8253 KB (480 words) - 16:17, 3 September 2020
- open(1,file='XDS.INP',status='old') read(1,101,end=98) string4 KB (517 words) - 22:00, 22 July 2021
- OSCILLATION_RANGE=1 DIRECTION_OF_DETECTOR_X-AXIS=1 0 03 KB (440 words) - 19:22, 24 March 2020
- MINIMUM_I/SIGMA=1 WFAC1=13 KB (443 words) - 12:57, 29 November 2017
- plot "frames.scales" using 1:3 plot "frames.scales" using 1:92 KB (341 words) - 15:47, 3 July 2019
- {| cellpadding="10" cellspacing="0" border="1" | 1 ||-|| 3, 4, 5, 143, 144, 145, 146 || P 13 KB (215 words) - 14:56, 9 July 2020
- To analyze XDS_ASCII.HKL in terms of the detailed course of CC<sub>1/2</sub> by frame number and resolution, you could use the program [https:// set multiplot layout 3,14 KB (781 words) - 15:21, 24 March 2020
- ...329.1 328.9 329.5 120.2 83.7 127.4 1 1 -1 0 1 -1 1 0 -1 -1 -1 0 ...219.6 285.4 329.4 114.5 85.4 109.9 1 1 0 0 -1 0 -1 0 -1 1 1 011 KB (864 words) - 14:28, 18 December 2014
- for j in $(seq 1 120); do for j in $(seq 1 100); do2 KB (261 words) - 22:13, 12 June 2022
- vol=a*b*c*sqrt(1.-cosa**2-cosb**2-cosg**2+2*cosa*cosb*cosg) resol=1./(2.*stol)3 KB (475 words) - 13:53, 28 June 2011
- To analyze XSCALE.HKL in terms of the detailed course of CC<sub>1/2</sub> by data set number and resolution, you could use the program [https set multiplot layout 3,14 KB (792 words) - 15:23, 24 March 2020
- ==CC<sub>1/2</sub> calculation== CC<sub>1/2</sub> can be calculated with the so-called σ-τ method ([https://doi.or8 KB (1,270 words) - 21:36, 4 May 2023
- ...(and re-indexed!) by cell-based assignment as P222<sub>1</sub> and P22<sub>1</sub>2, respectively, with ugly consequences for data merging and all downs3 KB (495 words) - 20:53, 8 September 2015
- INCIDENT_BEAM_DIRECTION=0 0 1 INCLUDE_RESOLUTION_RANGE=50 11 KB (214 words) - 10:53, 29 January 2020
- INCLUDE_RESOLUTION_RANGE=50 1 ! optional LABIN FILE 1 ALL9 KB (1,430 words) - 15:31, 22 October 2019
- OSCILLATION_RANGE=1.0 !degrees (>0) X-RAY_WAVELENGTH=1.0 !Angstroem2 KB (279 words) - 19:22, 24 March 2020
- ...e:backwardsrotaxis.png|400px|thumb|left|ROTATION_AXIS is -1 0 0 instead of 1 0 0]] [[File:wrongrotaxis.png|400px|thumb|left|ROTATION_AXIS is 0 1 0 instead of 1 0 0]]4 KB (569 words) - 16:31, 8 March 2023
- NBATCH=1 ...f outlier rejection would be also obtained by using (e.g.) WFAC1=2. NBATCH=1 removes any basic scaling done by CORRECT (as referred to by [https://journ2 KB (405 words) - 14:41, 24 November 2021
- ntask=$1 #total number of jobs itask=14 KB (649 words) - 14:48, 29 November 2019
- :<pre>CBF_DONT_USE_LONG_LONG=1 make all</pre>789 bytes (124 words) - 16:21, 4 September 2012
- * tiny spots (1-2 pixel) 450 frames collected on an ADSC Q315 CCD detector at SSRL BL 11-1. What is special about these data: at the time, it was not clear what the s2 KB (366 words) - 15:19, 24 March 2020
- ''This gives several possible Bravais lattice solutions...e.g. triclinic=1; tetragonal=9. Suppose you want XDS parameters for the tetragonal setting:815 bytes (129 words) - 13:22, 30 September 2019
- usage: xscale_isocluster -dmin <lowres> -dmax <highres> -nbin <nbin> -mode <1 or 2> -dim <dim> -clu <#> -cen <#,#,#,...> -<aAisw> XSCALE_FILE_NAME highres, lowres and nbin (default=1 for low, and 10 for high multiplicity) have the usual meanings.9 KB (1,463 words) - 14:12, 28 June 2022
- OSCILLATION_RANGE=1.0 !degrees (>0) X-RAY_WAVELENGTH=1.07176 !Angstroem5 KB (788 words) - 16:46, 15 July 2023
- ...e for XDS-Viewer the pixels go from 0 to NX-1 whereas for XDS they go from 1 to NX).<br />Instead of these files written by XDS, one could directly use # use [[adxv]] for visualization. Otherwise the same as with XDS-Viewer. (1.9.7beta version works for the PILATUS detector at SLS)4 KB (763 words) - 09:37, 28 July 2017
- # COORDINATES OF REC. BASIS VECTOR LENGTH 1/LENGTH 1 -0.0017685 0.0011854-0.0061735 0.0065303 153.139 KB (730 words) - 19:24, 24 March 2020
- ...if they are found adjacent in 3 dimensions; like x,y,z :: x+1,y,z :: x,y,z+1 :: etc. ...thers will mostly contribute to the integration area (but there is not a 1:1 relationship).6 KB (972 words) - 13:14, 7 February 2011
- '''1.''' create your XDS.INP file with '''2.''' run for lattice 1:3 KB (522 words) - 09:56, 21 May 2014
- ...rg/pdb/explore.do?structureId=1ZTV JCSG target name TB1631F], resolution 3.1 Å) - evaluated with Qingping Xu; it's one of the [http://www.jcsg.org JCSG ...rcsb.org/pdb/explore.do?structureId=1YCE ATPase C-ring], spacegroup P2<sub>1</sub>, resolution 2.4 Å - a large membrane protein structure, 44-fold NCS,5 KB (745 words) - 10:57, 2 May 2020
- ...] (which is a script that XDSGUI uses) assumes that frame numbers start at 1. We then "Save" and "Run XDS". # COORDINATES OF REC. BASIS VECTOR LENGTH 1/LENGTH8 KB (743 words) - 15:19, 24 March 2020
- ...s.html#DIRECTION_OF_DETECTOR_X-AXIS= DIRECTION_OF_DETECTOR_X-AXIS] - often 1 0 0 ...html#DIRECTION_OF_DETECTOR_Y-AXIS= DIRECTION_OF_DETECTOR_Y-AXIS] - often 0 1 018 KB (2,653 words) - 11:50, 12 May 2021
- ...is a measure of the non-isomorphism - for isomorphous data, that ratio is 1; for non-isomorphous data, the ratio is lower. This ratio is given in colum ...e program uses a formula (McCoy et al. (2017) PNAS 114, 3637-3641 equation 1) that relates coordinate difference (column 8 of output) to the factor. Thi10 KB (1,163 words) - 15:20, 24 March 2020
- <math>\Phi(\mathbf{x} )=\sum_{i=1}^{N-1}\sum_{j=i+1}^{N}\left(cc_{ij}-x_{i}\cdot x_{j}\right)^{2}</math> ...se ratio, long vectors a good signal-to-noise ratio, and vectors of length 1 represent ideal (prototypical) data sets. In fact, the length of each vecto10 KB (1,248 words) - 11:24, 11 August 2023
- ...to 72 MB in case of the Eiger 16M when running with MAXIMUM_NUBER_OF_JOBS=1. (If DELPHI=20 and OSCILLATION_RANGE=0.05 your computer thus has to have at /usr/local/bin/H5ToXds.bin $1 $2 "$tempfile" || rm "$tempfile"8 KB (1,261 words) - 23:07, 16 August 2022
- ...t-tasting protein of 207 residues that crystallizes in P4<sub>1</sub>2<sub>1</sub>2 with a monomer in the asymmetric unit. ...100 K the crystals were soaked for a few seconds in a solution containing 1 M sodium bromide and 25% (v/v) glycerol.7 KB (893 words) - 15:10, 24 March 2020
- ...aset which contains only frames 1-2,46-47,90-91 by specifying a DATA_RANGE=1 91. Although this complained about missing images, it still worked and we u ...they were supposed to exist but do not. --[[User:Mnfodje|Mnfodje]] 15:07, 1 November 2010 (UTC). ''Comment: there is EXCLUDE_DATA_RANGE for this purpos8 KB (1,266 words) - 15:52, 3 July 2019
- DATA_RANGE= 1 500 !adjacent input frames for each output frame. (default=1)5 KB (630 words) - 15:10, 24 March 2020
- ...lected with 0.1° oscillation range, at DELPHI=5 and MAXIMUM_NUMBER_OF_JOBS=1) should this be set to 0, to conserve memory and avoid slow processing due ...ecify DATA_RANGE=1 368 (pretending 23 batches of 8°) instead of DATA_RANGE=1 360 . XDS will complain about the missing 8 frames, but that has no adverse10 KB (1,597 words) - 22:55, 16 August 2022
- ...ed in [[XDSGUI]]'s IDXREF tab (or e.g. with GNUPLOT: plot "SPOT.XDS" using 1:2). TEST_RESOLUTION_RANGE=10. 1.6 KB (952 words) - 15:34, 22 October 2019
- (1) it looks for possible symmetries of the crystal lattice cell axes could become necessary for space groups P222(1) and P2(1)2(1)217 KB (1,809 words) - 22:55, 12 October 2018
- STARTING_ANGLE= 0.0000 STARTING_FRAME= 1 ROTATION_AXIS= 1.000000 0.000000 0.00000018 KB (2,135 words) - 20:20, 9 September 2016
- * shutterless and fast (0.1°/frame, 0.1 sec/frame) With JOB= CORRECT DATA_RANGE= 1 3600,4 KB (350 words) - 13:15, 26 May 2014
- !1 900 info_array(1) = 1 ! 1=XDS (generic_open may check this)30 KB (3,826 words) - 17:23, 3 April 2024
- ...he symmetry of the intensity-weighted point lattice (diffraction pattern). 1,2,3,4,6=n-fold rotation axis; -n means inversion centre (normally the - is {| cellpadding="10" cellspacing="0" border="1"25 KB (3,113 words) - 08:41, 6 September 2023